G1990919


Basic Information

Item Value
gene id G1990919
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 3854982 ~ 3857852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2277540
gagtttaacaacatggctactaaaggttggagtggagacggggagtttaacaacatggctactaaaggttgtATTATGTTGTAGTGGAGACggggagtttaacaacatggctactaaaggttggagtggagacagagagttaaacaacatggctactaaaggttggaGTGGAGACGGGGAGTTTAACAACAAGGGTAAGTCTTAaatagctccctattccctatatagtagtgcagtacttttgaccagagtactAAGAATTGCactatagagaatagggagccatttggggcACACAAAGCGAGGGTCAGACTAAGGACAAAGCAGAATAAGGATAATTGTTAATTTTCCCAGAGATGTTTAAAGGTGCATTCTGGGATTTGTACATCCATATTTGGATTTTAAATgaacgatacacacacacacacacacacacacacacacactctgcagtcCTTAGGGTACCCTAAACCTAAACAACTTTAGTGCATGGTCATTATTCAGAGATCCTTCCAAGAATGTATTCCAaaaggcaccatattccctacgtagtgcactactttagacctgtgCCCTATGATAGTAGTGTACTAAGTAAGGAATAGTGCTCTGATCTGGCACAACTTGACCACCAGTCCaccttcctgctttaattttaatGCTGATTAGGGAGTTTAAGGTGGTTTTAGTGGAAATGTGGACTTTAAGACCCTAGAGCTGATTGTAGTGCCCCCTAACTAATCTAATCTACAGCGACCGGCAAGAGCTCATGATGTAGACTGGTACCTACTACCGATACtacacaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatactaCGGTAGTGCCTGGTCATTGCTGAGAGATTTGACCAGCACACTGATCACCTGAACACTGGTTGACACCATTTAAACTGAACATCTGAACACTGGTTGACCCCATTTACCCTGAACACCTGAACACTGGTTGACCCAGTCACACTGAACACCTGAACACTGGTTGACCCCATTTAC
>TU2277544
gtttaacaacatggctactaaaggttggagtggagacggggagtttaacaacatggctactaaaggttggagtggagacggggagtttaacaacatggctactaaaggttggagtggagacagggagtttaacaacatggctactaaaggttggagtggagacagggagtttaacaacatggctactaaaggttgtATTATGTTGGAGTGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2277540 False 1088 lncRNA 0.43 3 3854982 3857852
TU2277544 True 214 lncRNA 0.44 2 3856923 3857220

Neighbor

gene id symbol gene type direction distance location
LOC110506223 LOC106588037 coding downstream 362232 3477158 ~ 3492750 (-)
LOC118944414 NA coding downstream 669190 3183940 ~ 3186858 (-)
LOC118944401 LOC106588129 coding downstream 737739 2958963 ~ 3117243 (-)
LOC118944482 LOC106588022 coding downstream 949299 2856093 ~ 2905683 (-)
LOC110516700 LOC106591035 coding upstream 216193 4074045 ~ 4158044 (-)
LOC110498670 anx2a coding upstream 512530 4370382 ~ 4390993 (-)
LOC118944435 LOC106588010 coding upstream 581981 4439833 ~ 4700484 (-)
LOC110526851 vps13c coding upstream 860800 4718652 ~ 4972108 (-)
LOC118944456 NA coding upstream 882064 4739916 ~ 4741747 (-)
G1990913 NA non-coding downstream 18190 3827052 ~ 3836792 (-)
G1990911 NA non-coding downstream 31653 3823053 ~ 3823329 (-)
G1990909 NA non-coding downstream 36929 3817387 ~ 3818053 (-)
G1990903 NA non-coding downstream 52216 3802542 ~ 3802766 (-)
G1990897 NA non-coding downstream 60410 3792853 ~ 3794572 (-)
G1990924 NA non-coding upstream 8788 3866640 ~ 3866946 (-)
G1990927 LOC106591093 non-coding upstream 15452 3873304 ~ 3880013 (-)
G1990939 NA non-coding upstream 33098 3890950 ~ 3893691 (-)
G1990943 NA non-coding upstream 40024 3897876 ~ 3898846 (-)
G1990942 LOC106591447 non-coding upstream 41468 3899320 ~ 3902818 (-)
G1990907 NA other downstream 44422 3810205 ~ 3810560 (-)
G1990760 LOC100379111 other downstream 339322 3502951 ~ 3515660 (-)
G1990495 LOC106562810 other downstream 566484 3287167 ~ 3288498 (-)
G1990926 NA other upstream 14748 3872600 ~ 3873176 (-)
G1991381 NA other upstream 615430 4473282 ~ 4473617 (-)

Expression


Co-expression Network