G1991722


Basic Information

Item Value
gene id G1991722
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5124127 ~ 5124802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2278721
AATCAGTATTGATCTGTAAACACAAGATCTCAAAACAATTAGCTGACTGTTCTCTAATAACCAGAGCTAAATATTCAGATTATCCCACTgacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtc
>TU2278720
AATCAGTATTGATCTGTAAACACAAGATCTCAAAACAATTAGCTGACTGTTCTCTAATAACCAGAGCTAAATATTCAGATTATCCCACTgacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataact
>TU2278723
AATCAGTATTGATCTGTAAACACAAGATCTCAAAACAATTAGCTGACTGTTCTCTAATAACCAGAGCTAAATATTCAGATTATCCCACTgacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataactaacacaacatgactgtcagatgggtaaataact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2278721 False 478 lncRNA 0.37 2 5124127 5124802
TU2278720 False 395 lncRNA 0.36 2 5124243 5124802
TU2278723 True 428 lncRNA 0.36 2 5124243 5124802

Neighbor

gene id symbol gene type direction distance location
LOC110515683 LOC105025469 coding downstream 37687 5043780 ~ 5086440 (-)
LOC110525056 LOC106592677 coding downstream 148837 4973789 ~ 4975290 (-)
LOC110526851 vps13c coding downstream 152019 4718652 ~ 4972108 (-)
LOC118944456 NA coding downstream 382380 4739916 ~ 4741747 (-)
LOC118944435 LOC106588010 coding downstream 423643 4439833 ~ 4700484 (-)
LOC110515681 agrp1 coding upstream 18929 5143731 ~ 5147310 (-)
LOC118944412 LOC100135822 coding upstream 124477 5249279 ~ 5301650 (-)
usp8 LOC106592072 coding upstream 537774 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 624724 5749526 ~ 5761005 (-)
LOC110514841 LOC106593544 coding upstream 652220 5777022 ~ 5793342 (-)
G1991711 NA non-coding downstream 25837 5097187 ~ 5098290 (-)
G1991699 NA non-coding downstream 66984 5056144 ~ 5057143 (-)
G1991690 NA non-coding downstream 135734 4987721 ~ 4988393 (-)
G1991688 NA non-coding downstream 150413 4973265 ~ 4973714 (-)
G1991650 NA non-coding downstream 159322 4963447 ~ 4964805 (-)
G1991807 NA non-coding upstream 3001 5127803 ~ 5210329 (-)
G1991806 NA non-coding upstream 5638 5130440 ~ 5131153 (-)
G1991813 NA non-coding upstream 17871 5142673 ~ 5143646 (-)
G1991823 NA non-coding upstream 59692 5184494 ~ 5185780 (-)
G1991824 NA non-coding upstream 65372 5190174 ~ 5190415 (-)
G1991436 NA other downstream 536257 4586727 ~ 4587870 (-)
G1991382 NA other downstream 649863 4473753 ~ 4474264 (-)
G1991381 NA other downstream 650510 4473282 ~ 4473617 (-)
G1991846 NA other upstream 132920 5257722 ~ 5259782 (-)
G1992375 NA other upstream 583466 5708268 ~ 5708684 (-)
G1992485 NA other upstream 861629 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 1272242 6391414 ~ 6444276 (-)
G1994075 NA other upstream 2264443 7389245 ~ 7389568 (-)

Expression


Co-expression Network