Gene
RNA
| Item | Value |
|---|---|
| gene id | G1991808 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 5207643 ~ 5209312 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: V-type proton ATPase subunit d 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2278907 | True | 913 | lncRNA | 0.47 | 3 | 5207643 | 5209312 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515681 | agrp1 | coding | downstream | 60333 | 5143731 ~ 5147310 (-) |
| LOC110515683 | LOC105025469 | coding | downstream | 121203 | 5043780 ~ 5086440 (-) |
| LOC110525056 | LOC106592677 | coding | downstream | 232353 | 4973789 ~ 4975290 (-) |
| LOC110526851 | vps13c | coding | downstream | 235535 | 4718652 ~ 4972108 (-) |
| LOC118944412 | LOC100135822 | coding | upstream | 39967 | 5249279 ~ 5301650 (-) |
| usp8 | LOC106592072 | coding | upstream | 453264 | 5662576 ~ 5697259 (-) |
| LOC110514656 | LOC106593544 | coding | upstream | 540214 | 5749526 ~ 5761005 (-) |
| LOC110514841 | LOC106593544 | coding | upstream | 567710 | 5777022 ~ 5793342 (-) |
| LOC110519162 | s27a2 | coding | upstream | 585776 | 5795088 ~ 5816747 (-) |
| G1991824 | NA | non-coding | downstream | 17228 | 5190174 ~ 5190415 (-) |
| G1991823 | NA | non-coding | downstream | 21863 | 5184494 ~ 5185780 (-) |
| G1991813 | NA | non-coding | downstream | 63997 | 5142673 ~ 5143646 (-) |
| G1991806 | NA | non-coding | downstream | 76490 | 5130440 ~ 5131153 (-) |
| G1991722 | NA | non-coding | downstream | 82841 | 5124127 ~ 5124802 (-) |
| G1991834 | NA | non-coding | upstream | 6196 | 5215508 ~ 5268097 (-) |
| G1991850 | NA | non-coding | upstream | 59378 | 5268690 ~ 5269595 (-) |
| G1991851 | NA | non-coding | upstream | 61260 | 5270572 ~ 5270930 (-) |
| G1991852 | NA | non-coding | upstream | 61960 | 5271272 ~ 5271854 (-) |
| G1991855 | NA | non-coding | upstream | 70848 | 5280160 ~ 5282745 (-) |
| G1991436 | NA | other | downstream | 619773 | 4586727 ~ 4587870 (-) |
| G1991382 | NA | other | downstream | 733379 | 4473753 ~ 4474264 (-) |
| G1991381 | NA | other | downstream | 734026 | 4473282 ~ 4473617 (-) |
| G1991846 | NA | other | upstream | 48410 | 5257722 ~ 5259782 (-) |
| G1992375 | NA | other | upstream | 498956 | 5708268 ~ 5708684 (-) |
| G1992485 | NA | other | upstream | 777119 | 5986431 ~ 5988773 (-) |
| LOC118936596 | LOC106591161 | other | upstream | 1187732 | 6391414 ~ 6444276 (-) |
| G1994075 | NA | other | upstream | 2179933 | 7389245 ~ 7389568 (-) |
