G1991855


Basic Information

Item Value
gene id G1991855
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5280160 ~ 5282745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2278970
gagagagagaaacctccTGCAGCTGTCTGCTCCTCACTGTCTCAGAGcatccacacacccacacatacaaacatccacacatccaaacatccacacatacaaacatccacaaatccacacatacaaacatccacacatccacacatccacacatacaaacatccacacatccacacatccacacatacaaacatccacacatccacacatacaaacatccacacatccaaacatacaaacatacaaacatccacacatccacacatccacacatccacacatacaaacatccacacatccaaaaatccacacatccacacatccacacatccacacatacaaacatccacacatccacacatacaaacatccacacatccacacatacaaacatccaaacatccacacatccacgcATCCACACATCCACGCATccaaacatccacacatccacacatccacacatccaaacatccacacatccacacatccacacatacaaacatccacGCATCCACGCATCCACGCATCCACGCATCCACGCATccaaacatccacacatccacacatacaaacatccacacatacaaacatccacacatccacacatccacacatccacacatccaaacatccacacatccacgcATCCACGCATCCATAcatccacacatacaaacatccacacatccacacatccacacatacaaacatccacacatccacgcatccaaacatccacacatccacacatacaaacatccacacatccacacatccaaacatccaaacatccacacatccaaacatccacacatccacacatccacacatacacacatacacacatccacacatccaaacat
>TU2278971
atccacacatccacacatacaaacatacaaacatccacacatacaaacatccaaacatccacacatccacacatccacacatacaaacatccacGCATCCACGCATCCACGCATCCACGCATccaaacatccacacatccacacatacaaacatccacacatccacacatccacacatccaaacatccacacatccacacatccacacatccacacatccacacatccacacatacaaacatccacacatccaaacatacaaacatccaaacatacaaacatccacacatccacacatccacacatccacacatccacacatccaaacatccacacatccaaaaatccacacatccacacatccacacatccacacatccacacatacaaacatccacacatacaaacatacaaacatccacacatccacacatccacacatccaaacatccacacatccaaaaatccacacatccacacatccacacatccacacatacaaacatccacacatccacacatacaaacatccacacatccaaaaatccacacatccacacatccacacatccacacatacaaacatccacacatacaaacatacaaacatccacacatccacacatacaaacatccacacatccacacatccacacatacaaacatccacacatccacacatacaaacatccacacatccaaacatacaaacatacaaacatccacacatccacacatccacacatccacacatacaaacatccacacatccaaaaatccacacatccacacatccacacatccacacatacaaacatccacacatccacacatacaaacatccacacatccacacatacaaacatccaaacatccacacatccacgcATCCACACATCCACGCATccaaacatccacacatccacacatccacacatccaaacatccacacatccacacatccacacatacaaacatccacGCATCCACGCATCCACGCATCCACGCATCCACGCATccaaacatccacacatccacacatacaaacatccacacatacaaacatccacacatccacacatccacacatccacacatccaaacatccacacatccacgcATCCACGCATCCATAcatccacacatacaaacatccacacatccacacatccacacatacaaacatccacacatccacgcatccaaacatccacacatccacacatacaaacatccacacatccacacatccaaacatccaaacatccacacatccaaacatccacacatccacacatccacacatacacacatacacacatccacacatccaaacat
>TU2278972
atccacacatccacacatacaaacatacaaacatccacacatacaaacatacaaacatccacacatccacacatacaaacatccacacatacaaacatccacacatccaaacatccacacatacaaacatccacacatccacacatccacacatccacacatccaaacatccacacatccacgcATCCACGCATCCATAcatccacacatacaaacatccacacatccacacatccacacatacaaacatccacacatccacgcatccaaacatccacacatccacacatacaaacatccacacatccacacatccaaacatccaaacatccacacatccaaacatccacacatccacacatccacacatacacacatacacacatccacacatccaaacat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106604339

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2278970 False 866 lncRNA 0.45 2 5280160 5282745
TU2278971 False 1338 lncRNA 0.44 2 5280160 5282289
TU2278972 True 402 lncRNA 0.43 2 5280160 5282289

Neighbor

gene id symbol gene type direction distance location
LOC110515681 agrp1 coding downstream 132850 5143731 ~ 5147310 (-)
LOC110515683 LOC105025469 coding downstream 193720 5043780 ~ 5086440 (-)
LOC110525056 LOC106592677 coding downstream 304870 4973789 ~ 4975290 (-)
LOC110526851 vps13c coding downstream 308052 4718652 ~ 4972108 (-)
usp8 LOC106592072 coding upstream 379831 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 466781 5749526 ~ 5761005 (-)
LOC110514841 LOC106593544 coding upstream 494277 5777022 ~ 5793342 (-)
LOC110519162 s27a2 coding upstream 512343 5795088 ~ 5816747 (-)
LOC110517106 fsd2 coding upstream 766609 6049354 ~ 6099236 (-)
G1991852 NA non-coding downstream 8306 5271272 ~ 5271854 (-)
G1991851 NA non-coding downstream 9230 5270572 ~ 5270930 (-)
G1991850 NA non-coding downstream 10565 5268690 ~ 5269595 (-)
G1991834 NA non-coding downstream 12063 5215508 ~ 5268097 (-)
G1991808 NA non-coding downstream 70848 5207643 ~ 5209312 (-)
G1991877 NA non-coding upstream 98115 5380860 ~ 5381295 (-)
G1991878 NA non-coding upstream 104566 5387311 ~ 5387815 (-)
G1991879 NA non-coding upstream 110028 5392773 ~ 5393119 (-)
G1991894 NA non-coding upstream 145363 5428108 ~ 5428714 (-)
G1991901 NA non-coding upstream 155614 5438359 ~ 5438581 (-)
G1991846 NA other downstream 20378 5257722 ~ 5259782 (-)
G1991436 NA other downstream 692290 4586727 ~ 4587870 (-)
G1991382 NA other downstream 805896 4473753 ~ 4474264 (-)
G1992375 NA other upstream 425523 5708268 ~ 5708684 (-)
G1992485 NA other upstream 703686 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 1114299 6391414 ~ 6444276 (-)
G1994075 NA other upstream 2106500 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 2368641 7647283 ~ 7665132 (-)

Expression


Co-expression Network