G1992330


Basic Information

Item Value
gene id G1992330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5657584 ~ 5658412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2279696
ATGAACTCTCTGCGTTGTTTTAGGGAGTTCGGTCTTCAGATGAACTCTCTGCGTTGTTTAGGGAGTTCTTGCTTGTTTTATGCTGGACACATTCTATGAAAACCAACAGCACAATGCACTTGCGGTGTTTGTATAAaacacattcatttattcaaatcGACCAACTTGACTTTTTGATTTGtagcaaatggcaccctattccctatatagtgccctacttttgaccagggcccatagggtagtgcactattaaGGGAATGGGGTGCACAAGTAGCCTTTTGTGACCGATTGAAAATGGTTGAGCCTGATACTGAGACATAAATCATGAGGCCTAATCAATAATGTAATCTATCTAGTAATTTTACTACCCTGGAAAATAACCTCTTCAGTGTACACTAGTCTACTGCACTCCCTTGCTATTAAAAAACGTGTTTTCATCTAAAATACATGACTTTACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGACTTAACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGTATAGGTTAAGCGGtatcagttaaataaaggtaaacaattaaAAAGATACATATTCTGGTTGTCTTGACAACGGC
>TU2279694
ATGAACTCTCTGCGTTGTTTTAGGGAGTTCGGTCTTCAGATGAACTCTCTGCGTTGTTTAGGGAGTTCTTGCTTGTTTTATGCTGGACACATTCTATGAAAACCAACAGCACAATGCACTTGCGGTGTTTGTATAAaacacattcatttattcaaatcGACCAACTTGACTTTTTGATTTGtagcaaatggcaccctattccctatatagtgccctacttttgaccagggcccatagggtagtgcactattaaGGGAATGGGGTGCACAAGTAGCCTTTTGTGACCGATTGAAAATGGTTGAGCCTGATACTGAGACATAAATCATGAGGCCTAATCAATAATGTAATCTATCTAGTAATTTTACTACCCTGGAAAATAACCTCTTCAGTGTACACTAGTCTACTGCACTCCCTTGCTATTAAAAAACGTGTTTTCATCTAAAATACATGACTTTACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGACTTAACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGACTTTACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGTATAGGTTAAGCGGtatcagttaaat
>TU2279697
TTAACTCTCTGCGTTGTTTTAGGGAGTTCGGTCTTCAGATGAACTCTCTGCGTTGTTTTAGGGAGTTCGGTCTTCAGATGAACTCTCTGCGTTGTTTTAGGGAGTTCGGTCTTCAGATGAACTCTCTGCGTTGTTTTAGGGAGTTCGGTCTTCAGATGAACTCTCTGCGTTGTTTAGGGAGTTCTTGCTTGTTTTATGCTGGACACATTCTATGAAAACCAACAGCACAATGCACTTGCGGTGTTTGTATAAaacacattcatttattcaaatcGACCAACTTGACTTTTTGATTTGtagcaaatggcaccctattccctatatagtgccctacttttgaccagggcccatagggtagtgcactattaaGGGAATGGGGTGCACAAGTAGCCTTTTGTGACCGATTGAAAATGGTTGAGCCTGATACTGAGACATAAATCATGAGGCCTAATCAATAATGTAATCTATCTAGTAATTTTACTACCCTGGAAAATAACCTCTTCAGTGTACACTAGTCTACTGCACTCCCTTGCTATTAAAAAACGTGTTTTCATCTAAAATACATGACTTTACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGACTTAACCTTCAATACCAATGTTAAGGAGATCTATAATCAATACATGTATAGGTTAAGCGGtatcagttaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2279696 False 619 lncRNA 0.37 2 5657584 5658296
TU2279694 False 617 lncRNA 0.37 2 5657633 5658296
TU2279697 True 686 lncRNA 0.39 2 5657633 5658412

Neighbor

gene id symbol gene type direction distance location
LOC118944412 LOC100135822 coding downstream 355934 5249279 ~ 5301650 (-)
LOC110515681 agrp1 coding downstream 510274 5143731 ~ 5147310 (-)
LOC110515683 LOC105025469 coding downstream 571144 5043780 ~ 5086440 (-)
LOC110525056 LOC106592677 coding downstream 682294 4973789 ~ 4975290 (-)
LOC118944456 NA coding downstream 915837 4739916 ~ 4741747 (-)
usp8 LOC106592072 coding upstream 4164 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 91114 5749526 ~ 5761005 (-)
LOC110514841 LOC106593544 coding upstream 118610 5777022 ~ 5793342 (-)
LOC110519162 s27a2 coding upstream 136676 5795088 ~ 5816747 (-)
LOC110517106 fsd2 coding upstream 390942 6049354 ~ 6099236 (-)
G1992351 NA non-coding downstream 6392 5635723 ~ 5651192 (-)
G1992345 NA non-coding downstream 29817 5627077 ~ 5627767 (-)
G1992343 NA non-coding downstream 32445 5624522 ~ 5625139 (-)
G1992342 NA non-coding downstream 33103 5624274 ~ 5624481 (-)
G1992311 NA non-coding downstream 37257 5585941 ~ 5620327 (-)
G1992329 NA non-coding upstream 2135 5660547 ~ 5661928 (-)
G1992370 NA non-coding upstream 40744 5699156 ~ 5699870 (-)
G1992374 NA non-coding upstream 49356 5707768 ~ 5708019 (-)
G1992376 NA non-coding upstream 50791 5709203 ~ 5709665 (-)
G1992379 NA non-coding upstream 57227 5715639 ~ 5715992 (-)
G1991846 NA other downstream 397802 5257722 ~ 5259782 (-)
LOC110526851 vps13c other downstream 803829 4718652 ~ 4972108 (-)
G1991436 NA other downstream 1069714 4586727 ~ 4587870 (-)
G1991382 NA other downstream 1183320 4473753 ~ 4474264 (-)
G1992375 NA other upstream 49856 5708268 ~ 5708684 (-)
G1992485 NA other upstream 328019 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 738632 6391414 ~ 6444276 (-)
G1994075 NA other upstream 1730833 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 1992974 7647283 ~ 7665132 (-)

Expression


Co-expression Network