G1993140


Basic Information

Item Value
gene id G1993140
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7066174 ~ 7068038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2280788
TAGCTTTTTGAAAGCAATTCTGACAAAAAACAAAATCCCCCTAAAAAGGATAGCATGAGGTGAGAGAATGAGACTAAAGAACAAaccatcttcttcttctttttaacaGCACGCCAGACTGTAGTTCAGGTAATACATTGATTTATTCATAGTTGGAATTGAACCTTGCAACCTTCAGAGGTTATCAGCTAATTGCACCTGAGGGGGTTTTGAGAAAGGAACAGAGAATGACTCCGCTATGTCCTAAGTGGCtccatattctctatatagtacactatggggccctggtcaatagtaatgcattatatagggaatagagtgccgttTGGGATGAAGGTAATGTCCTGTTTGTTCTaacccccctccttccctcttgtTCTTCcatcaccacccctcctcctgtTTCTCCTTAGAAGTTGTAATTTCCAGATAACACACTACCAACTGTTTCATGAGAGCCAAATTGAGTGACATTCactcataaaaaaaataaacaaatgtatttCTTTTTTCAGACTTGAGCTTTTcctcatgttttttttgtttgcacCTTGGTAACCTGGCAGGCGGTAGGGCACCTTGGTAACCTGGGAGGCGGTAGGGCACCGTGGTAACCTGGGAGGCGGTAGGGCACCTTGGTAACCTGGGAGGCGGTATGTAATACCCTGAAAGGGCTGTTTTAAACTTGAGTCAGTCAGCATGACTACATGACCTAGTCCCCTAAAGAAGTAGGAACTGTGACAGACCTGGCTGACAAGACGTACCCCATAACCCCTCCCCTTTCTTTATCTGTTGTGTAAAGGAGCATTGTTTTCGATAGCACCATCCAGTTGAGCTATACAAACTGCTTCGTGGGCTTTAAGGAACGAGTATTGTCCGTCAACTGCATTTCAAAAAAAATATAGGACTGAGCATAAAGCAGCGCTGATGTTTTTGAGATGTCTGTTGTTGTAAAGCTTTGGCATCTAGGCTAGACTATGAGAGTGGCGTTTACACTGGTTGCTAGTctgaaatgccaccctattccctatatagtgcaccacttttgaccacaGACCAACGGGGAGTGGAGCACTATAGGAGATAGGTTGTCATTTGGAAAGCAGCCTGGGTCGTACCAACATGGTAACATGATGCCATTTTACCTTCATAACACTTTCCAGTTTTATACGAGCTTACGAGGTCCAAAACGAGACGAACCCGAGCCCAGAGAAGTGGCTGGACTAGTGGCAGTGCTGTCCTCAGTCCAGTGTTTGTTAGAATACATTTCTCAATGCACTGTAGCCCTCGAGAAAGACAAGAGTCTGACGTTGATGTGGCTGACAAGACGGAAACGAAGATTTCTCTTCACCAAAGTGTGAAATCATCTGAAAATACTATTTTTTATCTCTTTGTTTCTGATACTTTCTGTGAAATGGGAAGTTCAGAGACACAGTTGCTTTCATGTATTATAACCATTCTTACAAACAAAATGTCCTATTTAAATAAATGTCATTCAAAA
>TU2280790
TAGCTTTTTGAAAGCAATTCTGACAAAAAACAAAATCCCCCTAAAAAGGATAGCATGAGGTGAGAGAATGAGACTAAAGAACAAaccatcttcttcttctttttaacaGCACGCCAGACTGTAGTTCAGGTAATACATTGATTTATTCATAGTTGGAATTGAACCTTGCAACCTTCAGAGGTTATCAGCTAATTGCACCTGAGGGGGTTTTGAGAAAGGAACAGAGAATGACTCCGCTATGTCCTAAGTGGCtccatattctctatatagtacactatggggccctggtcaatagtaatgcattatatagggaatagagtgccgttTGGGATGAAGGTAATGTCCTGTTTGTTCTaacccccctccttccctcttgtTCTTCcatcaccacccctcctcctgtTTCTCCTTAGAAGTTGTAATTTCCAGATAACACACTACCAACTGTTTCATGAGAGCCAAATTGAGTGACATTCactcataaaaaaaataaacaaatgtatttCTTTTTTCAGACTTGAGCTTTTcctcatgttttttttgtttgcacCTTGGTAACCTGGCAGGCGGTAGGGCACCGTGGTAACCTGGCAGGCGGTAGGGCACCGTGGTAACCTGGCAGGCGGTAGGGCACCGTGGTACCCTGGCAGGCGGTAGGGCACCTTGGTAACCTGGGAGGCGGTAGGGCACCTTGGTAACCTGGGAGGCGGTATGTAATACCCTGAAAGGGCTGTTTTAAACTTGAGTCAGTCAGCATGACTACATGACCTAGTCCCCTAAAGAAGTAGGAACTGTGACAGACCTGGCTGACAAGACGTACCCCATAACCCCTCCCCTTTCTTTATCTGTTGTGTAAAGGAGCATTGTTTTCGATAGCACCATCCAGTTGAGCTATACAAACTGCTTCGTGGGCTTTAAGGAACGAGTATTGTCCGTCAACTGCATTTCAAAAAAAATATAGGACTGAGCATAAAGCAGCGCTGATGTTTTTGAGATGTCTGTTGTTGTAAAGCTTTGGCATCTAGGCTAGACTATGAGAGTGGCGTTTACACTGGTTGCTAGTctgaaatgccaccctattccctatatagtgcaccacttttgaccacaGACCAACGGGGAGTGGAGCACTATAGGAGATAGGTTGTCATTTGGAAAGCAGCCTGGGTCGTACCAACATGGTAACATGATGCCATTTTACCTTCATAACACTTTCCAGTTTTATACGAGCTTACGAGGTCCAAAACGAGACGAACCCGAGCCCAGAGAAGTGGCTGGACTAGTGGCAGTGCTGTCCTCAGTCCAGTGTTTGTTAGAATACATTTCTCAATGCACTGTAGCCCTCGAGAAAGACAAGAGTCTGACGTTGATGTGGCTGACAAGACGGAAACGAAGATTTCTCTTCACCAAAGTGTGAAATCATCTGAAAATACTATTTTTTATCTCTTTGTTTCTGATACTTTCTGTGAAATGGGAAGTTCAGAGACACAGTTGCTTTCATGTATTATAACCATTCTTACAAACAAAATGTCCTATTTAAATAAATGTCATTCAAAA
>TU2280791
TAGCTTTTTGAAAGCAATTCTGACAAAAAACAAAATCCCCCTAAAAAGGATAGCATGAGGTGAGAGAATGAGACTAAAGAACAAaccatcttcttcttctttttaacaGCACGCCAGACTGTAGTTCAGGTAATACATTGATTTATTCATAGTTGGAATTGAACCTTGCAACCTTCAGAGGTTATCAGCTAATTGCACCTGAGGGGGTTTTGAGAAAGGAACAGAGAATGACTCCGCTATGTCCTAAGTGGCtccatattctctatatagtacactatggggccctggtcaatagtaatgcattatatagggaatagagtgccgttTGGGATGAAGGTAATGTCCTGTTTGTTCTaacccccctccttccctcttgtTCTTCcatcaccacccctcctcctgtTTCTCCTTAGAAGTTGTAATTTCCAGATAACACACTACCAACTGTTTCATGAGAGCCAAATTGAGTGACATTCactcataaaaaaaataaacaaatgtatttCTTTTTTCAGACTTGAGCTTTTcctcatgttttttttgtttgcacCTTGGTAACCTGGCAGGCGGTAGGGCACCTTGGTAACCTGGGAGGCGGTAGGGCACCTTGGTAACCTGGGAGGCGGTATGTAATACCCTGAAAGGGCTGTTTTAAACTTGAGTCAGTCAGCATGACTACATGACCTAGTCCCCTAAAGAAGTAGGAACTGTGACAGACCTGGCTGACAAGACGTACCCCATAACCCCTCCCCTTTCTTTATCTGTTGTGTAAAGGAGCATTGTTTTCGATAGCACCATCCAGTTGAGCTATACAAACTGCTTCGTGGGCTTTAAGGAACGAGTATTGTCCGTCAACTGCATTTCAAAAAAAATATAGGACTGAGCATAAAGCAGCGCTGATGTTTTTGAGATGTCTGTTGTTGTAAAGCTTTGGCATCTAGGCTAGACTATGAGAGTGGCGTTTACACTGGTTGCTAGTctgaaatgccaccctattccctatatagtgcaccacttttgaccacaGACCAACGGGGAGTGGAGCACTATAGGAGATAGGTTGTCATTTGGAAAGCAGCCTGGGTCGTACCAACATGGTAACATGATGCCATTTTACCTTCATAACACTTTCCAGTTTTATACGAGCTTACGAGGTCCAAAACGAGACGAACCCGAGCCCAGAGAAGTGGCTGGACTAGTGGCAGTGCTGTCCTCAGTCCAGTGTTTGTTAGAATACATTTCTCAATGCACTGTAGCCCTCGAGAAAGACAAGAGTCTGACGTTGATGTGGCTGACAAGACGGAAACGAAGATTTCTCTTCACCAAAGTGTGAAATCATCTGAAAATACTATTTTTTATCTCTTTGTTTCTGATACTTTCTGTGAAATGGGAAGTTCAGAGACACAGTTGCTTTCATGTATTATAACCATTCTTACAAACAAAATGTCCTATTTAAATAAATGTCATTCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2280788 False 1501 lncRNA 0.43 2 7066174 7068038
TU2280790 False 1557 lncRNA 0.43 2 7066174 7068038
TU2280791 True 1473 lncRNA 0.42 2 7066174 7068038

Neighbor

gene id symbol gene type direction distance location
LOC110506999 LOC105026498 coding downstream 4623 7048931 ~ 7061551 (-)
LOC118944479 NA coding downstream 17705 7047760 ~ 7048469 (-)
LOC110527018 LOC106587942 coding downstream 26436 7002295 ~ 7039738 (-)
LOC110516490 LOC106588008 coding downstream 235179 6824064 ~ 6830995 (-)
LOC118936596 LOC106591161 coding downstream 621898 6391414 ~ 6444276 (-)
LOC110507001 LOC106587953 coding upstream 574 7068612 ~ 7086951 (-)
LOC110527022 LOC106587927 coding upstream 107044 7175082 ~ 7179679 (-)
LOC110526832 LOC106587935 coding upstream 338119 7406157 ~ 7439603 (-)
LOC118944524 LOC106562850 coding upstream 387183 7455221 ~ 7528244 (-)
LOC118944525 NA coding upstream 397082 7465120 ~ 7466620 (-)
G1993134 NA non-coding downstream 23474 7040673 ~ 7042700 (-)
G1993121 NA non-coding downstream 61043 7004493 ~ 7005131 (-)
G1993117 NA non-coding downstream 66626 6999320 ~ 6999548 (-)
G1993118 NA non-coding downstream 68178 6997075 ~ 6997996 (-)
G1993112 NA non-coding downstream 80128 6985212 ~ 6986046 (-)
G1993146 NA non-coding upstream 21265 7089303 ~ 7089516 (-)
G1993147 NA non-coding upstream 26396 7094434 ~ 7094780 (-)
G1993150 NA non-coding upstream 37781 7105819 ~ 7106032 (-)
G1993153 NA non-coding upstream 39951 7107989 ~ 7108250 (-)
G1993158 NA non-coding upstream 52620 7120658 ~ 7124335 (-)
G1992485 NA other downstream 1077401 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1357490 5708268 ~ 5708684 (-)
G1991846 NA other downstream 1806392 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 1980488 5043780 ~ 5086440 (-)
G1994075 NA other upstream 321207 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 583348 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 681257 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 735806 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 other upstream 803144 7863456 ~ 7873075 (-)

Expression


Co-expression Network