G1993158


Basic Information

Item Value
gene id G1993158
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7120658 ~ 7124335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2280813
tctactgtctcagtatcataaccacacctggtctactgtcccagtatcataaccacacctggtctactgtcccagtatcataaccatacctggtctactgtcccagtatcataaccacacctggtataggtctactgtcccagtatcataaccatacctggtataggtctactgtcccagtatcataaccatacctggtctactgtcccagtatcataaccatacctggtatactgtcccagtatcataaccacacctggtctactgtcctagtatcataaccatacctggtctactgtctcagtatcataaccacacctggtctactgtcccagtttcataaccatacctggtatactgtcccagtatcataaccacacctggtatactgtcccagtatcataaccatacctggtatactgtcccagtatcaaaaccatacctggtatactgtcccagtatcataaccatacccgGTATACTAGTCCTGTCCCCGTTATCCAGTCAGACTGAGTCCTGGCCCCGTTATCCAGTCAGACTGAGTCCTGGCCCCGTTATCCAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2280813 True 564 lncRNA 0.46 2 7120658 7124335

Neighbor

gene id symbol gene type direction distance location
LOC110507001 LOC106587953 coding downstream 33707 7068612 ~ 7086951 (-)
LOC110506999 LOC105026498 coding downstream 59107 7048931 ~ 7061551 (-)
LOC118944479 NA coding downstream 72189 7047760 ~ 7048469 (-)
LOC110527018 LOC106587942 coding downstream 80920 7002295 ~ 7039738 (-)
LOC110516490 LOC106588008 coding downstream 289663 6824064 ~ 6830995 (-)
LOC110527022 LOC106587927 coding upstream 50747 7175082 ~ 7179679 (-)
LOC110526832 LOC106587935 coding upstream 281822 7406157 ~ 7439603 (-)
LOC118944524 LOC106562850 coding upstream 330886 7455221 ~ 7528244 (-)
LOC118944525 NA coding upstream 340785 7465120 ~ 7466620 (-)
LOC110526835 LOC105026486 coding upstream 433676 7558011 ~ 7564844 (-)
G1993153 NA non-coding downstream 12408 7107989 ~ 7108250 (-)
G1993150 NA non-coding downstream 14626 7105819 ~ 7106032 (-)
G1993147 NA non-coding downstream 25878 7094434 ~ 7094780 (-)
G1993146 NA non-coding downstream 31142 7089303 ~ 7089516 (-)
G1993140 NA non-coding downstream 52620 7066174 ~ 7068038 (-)
G1993167 LOC106587930 non-coding upstream 14453 7138788 ~ 7140098 (-)
G1993176 NA non-coding upstream 42032 7166367 ~ 7167491 (-)
G1993174 NA non-coding upstream 68730 7193065 ~ 7194184 (-)
G1993196 NA non-coding upstream 81785 7206120 ~ 7206330 (-)
LOC118936596 LOC106591161 other downstream 676429 6391414 ~ 6444276 (-)
G1992485 NA other downstream 1131885 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1411974 5708268 ~ 5708684 (-)
G1991846 NA other downstream 1860876 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 2034972 5043780 ~ 5086440 (-)
G1994075 NA other upstream 264910 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 527051 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 624960 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 679509 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 other upstream 746847 7863456 ~ 7873075 (-)

Expression


Co-expression Network