G1994101


Basic Information

Item Value
gene id G1994101
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7553080 ~ 7646023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2282131
ttacaattattttattGAATCCAATCCAGTCTTAAAAGTCATTGACAAGAGGTCCATTGCCTCAAAACGCAAATTAAAAATGTTATATTGTTcggttgctttaaaaaaaaaacaagtcccTGATTTAACACGTACAGCAGATCACTCAGATGGTAAAACTCAAAAAGGTCCGTTCTGATCGTCATCTTTGACTCCCGATCCGGTTCCTCCAACACCACCTCCATGTTTTCTGTTTCACTTCCACAGCAAATAAACTCAAGACATTAAATGCTTGTTTAGATCAGTGCATTTCAACTCTACACAAATCTAAATGGCTAGTTTTAAAAGATTTCAGAAGAGCAAAACGGAAACTTGTGCAACTTTTACAAGTAGTGTCTTTTCCCCACACTTGGATTTTGCCTGTCTAAAATCATAACATCGCGATCCACTTTTAAATGTACTGCAAAACATCTAAAACATTAACTGCTTCCCAATTCTCCAAATCCATGACAAGTAGTGTGCAGAACAAGTGTACACTTCAGGAAAAGGGTAGATGATGGATAGTGGAGAATGAGGACGTAGCCAATGGTTGTAGTTCTACTTGGACTTAGCGAAGCCCACCCGGTTGTTGTCACGGTCGAACACAGTGTAGTATTGGCCAATGAATACATCTCCCAGGATCCACAGCGGCCCGGCGGGGGCGGGGATATCCAGGCCCATGAAGCCACTCAGGCAGATGGTCTTACCAGCCTGGCTCTCCTGGAGTGGGGAAAGGAATACAGAGACGCACACAGTCAGACGCAGAGCAGAAGGAATACAGAGACGCACACAGTCAGACGCAGAGCAGAAGGGGGAAGGAATACAGAGACGCACACAGTCCCAGATGGTGTCCAGTAAGCACCAAACAGTTTGAAACAGAGAGGTACTAACTTGTTCATTGCTGAAATGCTCATTTTCTGTTGCAcaatgttttgctacggtgtgcacgAATGAACAAGAGCCTGATATGTAAATGACCAAACAACAGAAATACTAACATCGTAGCCAACAGAGGAACAAGAGCCTGATATGTAAATGACCAAACGACAGAAATACTAACATCGTAGCCAACAGAGGAACAAGAGCCTGATATGTAAATGACCAAACAACAGAAATACTAACATCGTAGCCAACAGAGGAACAAGAGCCCGATATGTAAATGACCAAACGACAGAAATACTAACATCGTAGCCAACAGAGGGACGGTTTGTAAGGAAATTCAATAGGCCATTATTATGCAGTAATAATTGTTGAAATTACAATTACATTCTGAGACAAACATTCAAATCGATGTACGTTGTCTCCCATGGTTCTGAGAATGGCTTAGTGAATTAAACAACGGCCTGTTTGTGTGGTATAATGACTGACTGAGCGGACACCGTTGCTATGATTGTTGAATTAGACTCTACTGCCCTCTGCTGGATATCTGCACCCCTCCTCCCCCGgatatctgccccccccccctccctgctgGATATCTGCCTCCACATTGTTTTGCTCAAAGTAAGAGGTCCAGTAGATTctacagatagagacagagaagagagaaacaaaTAAAGACAGAGACTCACCTTGAGGACGTACTGCTCTGCAGTCAGACTGTAGGACTGTCCTCCCAGGTTGAATGTGATGACAGGCATGGTAGGAATCTTATCACAGTTCACCATGTACTGAAACACAAGCGGAAACAGTCAGTGAAGGTGCTACTGTATTCAGGAAATAAAGTGGAGTACAGTTCTCTAAGTAATAGGAGACGGGCCAGGTCAAGAGGGACTTTTTTTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGAACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACAAGAGGAGGAGGAACGTAGCTGTAGTTGGGGAACAGTGTTAAACTAGAGGAGTGGGGTTGATCCTGTGTCTTACCTCTCCCTGGATGAGTGGTGTTGCTCCGATGGCCCTCTGCAGGGCCTTGACCTCGGCCGCGGGGCCGGTGATGAGGGACGTGCCGGTGTCCACGATGGCCTCACAGCCTCCCTTACACAGACTCAGCTGGCTCCCCACACCCATCctgtacaaaacacacacaggttTGAATCCAGCTCTCTTGGTGGAAGGAGggagagagagaggg
>TU2282135
CTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACTAGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACAAGAGGAGGAGGAACGTAGCTGTAGTTGGGGAACAGTGTTAAACTAGAGGAGTGGGGTTGATCCTGTGTCTTACCTCTCCCTGGATGAGTGGTGTTGCTCCGATGGCCCTCTGCAGGGCCTTGACCTCGGCCGCGGGGCCGGTGATGAGGGACGTGCCGGTGTCCACGATGGCCTCACAGCCTCCCTTACACAGACTCAGCTGGCTCCCCACACCCATCctgtacaaaacacacacaggttTGAATCCAGCTCTCTTGGTGGAAGGAGGTTACACAAGATCTGTCCTCAGAGCAGTAAATGCCTTTTCACAGGCTTCTCTATTTAAAACACTAAACCAATAACTCATTTAGGTTTACAGTTCCCTCCCGACATAGTGAAAACAGCGTTGATTTCATTCATGCTCGCAGTCCACAAAACTGAATTTTGCAGAATGCAGTTACATCAAGACAATACtttaaaacaagacaaaaacaatatAAAACATTCAATTTAAAAGGACCTCAATGACAAGACATTTGTTTAAAGTCACATTTGGCCATTAAAATGTGTGATTGCAGTGGCTACGGTAAACACATTTAGATTTATCCTGGCGTTGATGCTGTACAGTTGACTCTGGAGGACTTTACCAGtaccgtctcctctcctcagtgGTAGTAGATCATGTAGAGGAGGGTTCAggaccgtctcctctcctctgtggtaGTAGATCATGTAGAGGAGGGTTCAgtaccgtctcctctcctctgtggtaGTAGATCATGTAGAGGAGGGTCCAGTACAGTCTCCTCTCTGGTAGTAGATCATGTAGAGGAGGGTCCAGTACcgtttcctctcctctgtggtAGTAGATCATGTAGAGGAGGGTCCAGTACcgtttcctctcctctgtggtAGTAGATCATGTAGAGGAGGGTTCAGTACCGTCTCCTCTTCTCTGTGCCAGTAGATCAGGGTGGTCAGGTTGGTGCATCATGTCAGTGACCAATCTTACTGCTGCTTGACCTCtgactgtagtgatggaagggtCAGCGGGATGTCTCCGTTTTGTTATCATCTTGATTGTCCTTTTTGGGCACGTTCTACCTGGAACAGGCCGCCCACCCGGGATTAGTGGAGCTGGTTCCACCTGGAACAGGCCGCCCACCCGGGATTAGGGGAtctggttctacctggaacaggCCGTCCACCCAGGATTAGTGGAGC
>TU2282134
CTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCAGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACTAGAGGAGGAGGAACGTAGCTGTAGTCGGGGACCACAGTGTTGAACTAGAGGAGGAACGTAGCTGTAGTTGGGGACCACAGTGTTGAACAAGAGGAGGAGGAACGTAGCTGTAGTTGGGGAACAGTGTTAAACTAGAGGAGTGGGGTTGATCCTGTGTCTTACCTCTCCCTGGATGAGTGGTGTTGCTCCGATGGCCCTCTGCAGGGCCTTGACCTCGGCCGCGGGGCCGGTGATGAGGGACGTGCCGGTGTCCACGATGGCCTCACAGCCTCCCTTACACAGACTCAGCTGGCTCCCCACACCCATCctgtacaaaacacacacaggttTGAATCCAGCTCTCTTGGTGGAAGGAGGTTACACAAGATCTGTCCTCAGAGCAGTAAATGCCTTTTCACAGGCTTCTCTATT

Function

NR:

description
cathepsin D precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2282131 False 2745 lncRNA 0.47 3 7553080 7646023
TU2282135 False 1550 lncRNA 0.50 2 7642173 7644222
TU2282134 True 807 lncRNA 0.54 2 7643054 7644222

Neighbor

gene id symbol gene type direction distance location
LOC118944524 LOC106562850 coding downstream 24836 7455221 ~ 7528244 (-)
LOC118944525 NA coding downstream 86460 7465120 ~ 7466620 (-)
LOC110526832 LOC106587935 coding downstream 113477 7406157 ~ 7439603 (-)
LOC110527022 LOC106587927 coding downstream 373401 7175082 ~ 7179679 (-)
LOC110507001 LOC106587953 coding downstream 466129 7068612 ~ 7086951 (-)
LOC118936603 LOC106587968 coding upstream 1375 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 coding upstream 98329 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 coding upstream 156620 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 coding upstream 217433 7863456 ~ 7873075 (-)
LOC118944444 LOC106587932 coding upstream 234239 7880262 ~ 7881911 (-)
G1994110 NA non-coding downstream 70 7552651 ~ 7553010 (-)
G1994119 NA non-coding downstream 50664 7501921 ~ 7502416 (-)
G1994117 NA non-coding downstream 62890 7488825 ~ 7490190 (-)
G1994115 NA non-coding downstream 64671 7484073 ~ 7488409 (-)
G1994116 NA non-coding downstream 67165 7484254 ~ 7485915 (-)
G1994174 NA non-coding upstream 27608 7673631 ~ 7680928 (-)
G1994184 NA non-coding upstream 68326 7714349 ~ 7714815 (-)
G1994196 NA non-coding upstream 86120 7732143 ~ 7732443 (-)
G1994075 NA other downstream 163512 7389245 ~ 7389568 (-)
LOC118936596 LOC106591161 other downstream 1108851 6391414 ~ 6444276 (-)
G1992485 NA other downstream 1564307 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1844396 5708268 ~ 5708684 (-)
G1991846 NA other downstream 2293298 5257722 ~ 5259782 (-)
LOC118944463 LOC106562776 other upstream 454297 8096974 ~ 8105982 (-)

Expression


Co-expression Network