G1993378


Basic Information

Item Value
gene id G1993378
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7566562 ~ 7580408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2281078
CCAGGGTTTATTTGATGACAATTAGTATAAATATTGCACAAtataatattttttggggggggggggtcacatagCTGTTTTTGTGTTTCGTGTGAAACAAAAGACTAGATATCCAATTGGGGGACAAACGGAACTCCGAACACATAGTTTGTTTGTTTAAACTGGAGCGTTTGATTATACACGTGGCTATGTGTCAGAAGAGTTCCAGACAGGTTTTTCTTTCTACTCCTTAGTAGTCTCAAACATCATCTTCCTGTCTGGAACTCCAGGAACATCTATTCCTTATGAGTCTCAAACATCTTCCTGTCTGGAACTCCAGGAACATCTACTCCTTATGAGTCTCAAACATCTTCCTGTCTGGAACTCCAGGAACATCTACTCCTTAGCAGTCTCAAACATCTTCTTTCTGTCTGATTTGTCTTCGATGTTCTTACGCCAGTCGCCCACAGATTC
>TU2281079
CCAGGGTTTATTTGATGACAATTAGTATAAATATTGCACAAtataatattttttggggggggggggtcacatagCTGTTTTTGTGTTTCGTGTGAAACAAAAGACTAGATATCCAATTGGGGGACAAACGGAACTCCGAACACATAGTTTGTTTGTTTAAACTGGAGCGTTTGATTATACACGTGGCTATGTGTCAGAAGAGTTCCAGACAGGTTTTTCTTTCTACTCCTTAGTAGTCTCAAACATCATCTTCCTGTCTGGAACTCCAGGAACATCTACTCCTTATGAGTCTCAAACATCTTCCTGTCTGGAACTCCAGGAACATCTACTCCTTAGCAGTCTCAAACATCTTCTTTCTGTCTGATTTGTCTTCGATGTTCTTACGCCAGTCGCCCACAGATTC
>TU2281085
TTTTTTTTTCAGCAAATCATTTATTTTCAGAAATTGAATTGGAACAAAATTACTTAACAGAACTACAGATTGTTTTGATTACACACATTAACACCTGTTTACAACAGTCCTAGAGAGATGGAACTATCTCTTAGATACCATAACAATTCATTAACACCTGTTTACAACAGTCCTAGAGAGATGGAACTACCTCTTAGATACCATAACAATTCATTAACATCTGTTTACAACAGTCCTAGAGAGATGGAACTACCTCTTAGATACCATAACAATTCATTAACATCTGTTTACAACAGTCCTAGAGAGATGGAACTACCTCTTAGATCCCATAACAATTCCTTAACACCTGTTTACAACAGTCCCAGTGAGATGGAATTACCTCTTAGATACCATAACAATTCATTAACACCTGTTTACAACAGTCCTAGAGAGATGGAACTACCTCTTAGATGCCATAACAATTCATTAACACCTGTCACAACAGTCCTAGAGAGATGGATCTACCTCTTAGATACCATAACAATTCATTAACACCTGTCACAACAGTCCTAGAGAGATGGAACTACCTCTTAGATACCATAACAATTCATTAACACCTGTTTACAACAGTCCCAGGGAGATGGAATTACCTCTTAGATACCATAACAATTCATTAACACCTGTCACAACAGTCCTAGAGTGATGGAACTACCTCTTAGATACCATAACAATTCATTAACACCTGTCACAACAGTCCTAGAGTGATGGAACTACATCTTAGATGAATTTAGCCAGAGacgaaaaacaaacaaacaaacaaacgagTCGTAACTGTATAACTTCGTAACCAAAGGCAGAAGGTTGTTCAAGCCGCCACAAACATCTTCCTGTCTGGAACTCCAGGAACATCTACTCCTTAGCAGTCTCAAACATCTTCTTTCTGTCTGATTTGTCTTCGATGTTCTTACGCCAGTCGCCCACAGATTC
>TU2281087
TTTTTTTTTCAGCAAATCATTTATTTTCAGAAATTGAATTGGAACAAAATTACTTAACAGAACTACAGATTGTTTTGATTACACACATTAACACCTGTTTACAACAGTCCTAGAGAGATGGAACTATCTCTTAGATACCATAACAATTCATTAACACCTGTTTACAACAGTCCCAGGGAGATGGAATTACCTCTTAGATACCATAACAATTCATTAACACCTGTCACAACAGTCCTAGAGTGATGGAACTACCTCTTAGATACCATAACAATTCATTAACACCTGTCACAACAGTCCTAGAGTGATGGAACTACATCTTAGATGAATTTAGCCAGAGacgaaaaacaaacaaacaaacaaacgagTCGTAACTGTATAACTTCGTAACCAAAGGCAGAAGGTTGTTCAAGCCGCCACAAACATCTTCCTGTCTGGAACTCCAGGAACATCTACTCCTTAGCAGTCTCAAACATCTTCTTTCTGTCTGATTTGTCTTCGATGTTCTTACGCCAGTCGCCCACAGATTC

Function

NR:

description
troponin I, fast skeletal muscle-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2281078 False 453 lncRNA 0.41 2 7566562 7580408
TU2281079 False 403 lncRNA 0.41 3 7566562 7580408
TU2281085 False 966 TUCP 0.37 2 7579381 7580408
TU2281087 True 527 lncRNA 0.38 2 7579381 7580408

Neighbor

gene id symbol gene type direction distance location
LOC118944523 NA coding upstream 102009 7458507 ~ 7464553 (+)
LOC110526828 myod coding upstream 161828 7402613 ~ 7404734 (+)
LOC110512834 LOC106562849 coding upstream 230996 7210680 ~ 7335566 (+)
LOC118944526 NA coding upstream 243645 7320572 ~ 7322917 (+)
LOC118944436 NA coding upstream 372178 7191508 ~ 7194384 (+)
LOC118936249 LOC100136761 coding downstream 46511 7626919 ~ 7646026 (+)
LOC118944528 LOC106562687 coding downstream 126707 7707115 ~ 7712040 (+)
LOC118944527 LOC105007372 coding downstream 131747 7712155 ~ 7732052 (+)
LOC110526846 LOC106587886 coding downstream 171200 7751608 ~ 7760702 (+)
LOC110514125 LOC105007369 coding downstream 185055 7765463 ~ 7794548 (+)
G1993364 NA non-coding upstream 13970 7527964 ~ 7552592 (+)
G1993347 NA non-coding upstream 66955 7499285 ~ 7499607 (+)
G1993344 NA non-coding upstream 76963 7484094 ~ 7489599 (+)
G1993287 NA non-coding upstream 141789 7424017 ~ 7424773 (+)
G1993289 NA non-coding upstream 143200 7420283 ~ 7423362 (+)
G1993391 NA non-coding downstream 24586 7604994 ~ 7605907 (+)
G1993405 NA non-coding downstream 64184 7644592 ~ 7645040 (+)
G1993372 LOC106587968 non-coding downstream 66577 7646985 ~ 7651309 (+)
G1993409 NA non-coding downstream 78078 7658486 ~ 7660138 (+)
G1993445 NA non-coding downstream 134277 7714685 ~ 7715026 (+)
G1993041 NA other upstream 419102 7147197 ~ 7147460 (+)
LOC118944480 NA other upstream 517377 7047606 ~ 7049185 (+)
G1992905 NA other upstream 569714 6996351 ~ 6996848 (+)
LOC118944397 LOC106596248 other upstream 1182923 6373018 ~ 6389822 (+)
G1993431 NA other downstream 84584 7664992 ~ 7668475 (+)
G1993435 NA other downstream 125709 7706117 ~ 7709765 (+)
G1993521 NA other downstream 378369 7958777 ~ 7959464 (+)
G1993550 NA other downstream 457778 8038186 ~ 8042021 (+)
G1993593 LOC106587964 other downstream 563344 8143752 ~ 8148919 (+)

Expression

G1993378 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
End of interactive chart.

G1993378 Expression in each Bioproject

Bar chart with 9 bars.
G1993378 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
End of interactive chart.

Co-expression Network