G1994302 (LOC106594039)


Basic Information

Item Value
gene id G1994302
gene name LOC106594039
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8008778 ~ 8038089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2282450
aaatgtgtaaaaagtcaaggggtctgaatactttccaaatgcacagtaTATCCTTTTCCCATCCCCTGGAGGTGTCGCcatcattgttttttgtttgttagttagttagtgtatGAACAAACAACGAGGAAGTGATTGGTACATCAGTCAGTCTGTTACTGTATGAGATCAGCAGGGAGGACCAGGTTTGTGTAGGTCTGTCCATGCGTTGACCTGGTGAGTGATACTGTGTGTGGTGGTGGCTATCAGCCGTGAGTAGGTGCAGCGGTCATAAGCCACAGGGAAAACCTGGAAGAGGTTTCCACTGGGGGGGTCAGTAGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAGGCCCAGAGCATAAGGTGGATATACTGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGACCTCGGGTCCCGGAGAACTGCGGCGCTACTTTCCACCATTCCAGTCATGTAGTTCTGCGTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGAAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGAACCTCTCTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCGTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTTTGGCTCATCCAGGATGAA
>TU2282454
TATCCAAATACTTttcgacttttactcaagtcgtattttactgggggactttcacttttacttgagtcattttctattaaagtagctttacttttactacagtatgaTGATTGAGTACCTTTTCCACCACGGCAGAAACACAGAGATAATGTGACCCTTCTCTACCACacccacagaaacacagagataagGTGATCCTTCTCTACCACacccacagaaacacagagataagGTGATCCTTCTCTACCACacccacagaaacacagagataagGTGATCCCTCTCTACCACTCCCAGAGAAAAGCATCCAAGAGAAAGTCACAGCTCAAACAAGACACCCACAGGGAGCGGGGTCACGGTCAGGGACACCATTGTCCAGCACCCATGGAGCACTGGGGTTAAGTGTTTGCTCAAAGGCACAGTGACAGATTTGCCATTTTGTCAGCTCCAGGATTGGAACCATCCCCCTTTtgggttattggcccaacgctctaacctcaaGGCTATTTGTCTTTCCCAGAGTGTTGTTTTCAATGACAGACAGGCCCAGGTTGGTGCAAGTTTCTCCACACGTCCAGAAGCTCCTGAGGAGTGTTGAGGATGGTTGTGATAACAGCCATGTAGTGACAGCGGTCCTGGGCTCCTGCATACCCCTGAAAAAGGTTTCCACTGGGGGGGTCAGTTGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAGGCCCAGAGCATAAGGTGGATATACCGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGAGTTATGGTCTCTTAGAACAGCGCCCCGTCGGGCCACTAGTCCAGTCTGGTAGTTCTGCTTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGAAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGAACCTCTCTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCGTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTTTGGCTCATCCAGGATGAA
>TU2282445
aaatgtgtaaaaagtcaaggggtctgaatactttccaaatgcacagtaTATCCTTTTCCCATCCCCTGGAGGTGTCGCcatcattgttttttgtttgttagttagttagtgtatGAACAAACAACGAGGAAGTGATTGGTACATCAGTCAGTCTGTTACTGTATGAGATCAGCAGGGAGGACCAGGTTTGTGTAGGTCTGTCCATGCGTTGACCTGGTGAGTGATACTGTGTGTGGTGGTGGCTATCAGCCGTGAGTAGGTGCAGCGGTCATAAGCCACAGGGAAAACCTGGAAGAGGTTTCCACTGGGGGGGTCAGTTGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAGGCCCAGAGCATAAGGTGGATATACCGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGAGTTATGGTCTCTTAGAACAGCGCCCCGTCGGGCCACTAGTCCAGTCTGGTAGTTCTGCTTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGCAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGGACCTCTTTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCCTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTCTGGCTCATCCAGGATGAAGGAGTACTCATGTGGGTATTGTACATGGTACGGTCCTCGGGACACGTACGGGGGAGGAGCGGCCAGAATCGCAACTGACATGTTTGCTGCTGGCTTGGTTGTTGAAGGTGAGATCCTTTCTTTGAGGTCAACTGCCAGGATGACCACAATCATCATCACGACCAGGAACAGAAACAGGCAAAGGCAGCTGTTGCGACACCAGCGTCTCTTTTTGAGCTGTGTTTTGTC
>TU2282446
aaatgtgtaaaaagtcaaggggtctgaatactttccaaatgcacagtaTATCCTTTTCCCATCCCCTGGAGGTGTCGCcatcattgttttttgtttgttagttagttagtgtatGAACAAACAACGAGGAAGTGATTGGTACATCAGTCAGTCTGTTACTGTATGAGATCAGCAGGGAGGACCAGGTTTGTGTAGGTCTGTCCATGCGTTGACCTGGTGAGTGATACTGTGTGTGGTGGTGGCTATCAGCCGTGAGTAGGTGCAGCGGTCATAAGCCACAGGGAAAACCTGGAAGAGGTTTCCACTGGGGGGGTCAGTAGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAAGCCCAGAGCATAAGGTGGGTATACCGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGAGTTATGGTCTCTTAGAACAGCGGCCCATTGAGCCACTAGTCCAGTCTGGTAGTTCTGCGTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGCAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGGACCTCTTTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCCTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTCTGGCTCATCCAGGATGAAGGAGTACTCATGTGGGTATTGTACATGGTACGGTCCTCGGGACACGTACGGGGGAGGAGCGGCCAGAATCGCAACTGACATGTTTGCTGCTGGCTTGGTTGTTGAAGGTGAGATCCTTTCTTTGAGGTCAACTGCCAGGATGACCACAATCATCATCACGACCAGGAACAGAAACAGGCAAAGGCAGCTGTTGCGACACCAGCGTCTCTTTTTGAGCTGTGTTTTGTC
>TU2282449
aaatgtgtaaaaagtcaaggggtctgaatactttccaaatgcacagtaTATCCTTTTCCCATCCCCTGGAGGTGTCGCcatcattgttttttgtttgttagttagttagtgtatGAACAAACAACGAGGAAGTGATTGGTACATCAGTCAGTCTGTTACTGTATGAGATCAGCAGGGAGGACCAGGTTTGTGTAGGTCTGTCCATGCGTTGACCTGGTGAGTGATACTGTGTGTGGTGGTGGCTATCAGCCGTGAGTAGGTGCAGCGGTCATAAGCCACAGGGAAAACCTGGAAGAGGTTTCCACTGGGGGGGTCAGTAGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAGGCCCAGAGCATAAGGTGGATATACCGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGAGTTATGGTCTCTTAGAACAGCGCCCCGTCGGGCCACTAGTCCAGTCTGGTAGTTCTGCTTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGCAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGGACCTCTTTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCCTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTCTGGCTCATCCAGGATGAAGGAGTACTCATGTGGGTATTGTACATGGTACGGTCCTCGGGACACGTACGGGGGAGGAGCGGCCAGAATCGCAACTGACATGTTTGCTGCTGGCTTGGTTGTTGAAGGTGAGATCCTTTCTTTGAGGTCAACTGCCAGGATGACCACAATCATCATCACGACCAGGAACAGAAACAGGCAAAGGCAGCTGTTGCGACACCAGCGTCTCTTTTTGAGCTGTGTTTTGTC
>TU2282451
TATCCAAATACTTttcgacttttactcaagtcgtattttactgggggactttcacttttacttgagtcattttctattaaagtagctttacttttactacagtatgaTGATTGAGTACCTTTTCCACCACGGCAGAAACACAGAGATAATGTGACCCTTCTCTACCACacccacagaaacacagagataagGTGATCCTTCTCTACCACacccacagaaacacagagataagGTGACCCTTCTCTACCACacccacagaaacacagagataagGCAATCCTTATCTACCACACCCATAGAAACACAGGGATAAGGTGATCCCTCTCTACCACTCCCAGAGAAAAGCATCCAAGAGAAAGTCACAGCTCAAACAAGACACCCACAGGGAGCGGGGTCACGGTCAGGGACACCATTGTCCAGCACCCATGGAGCACTGGGGTTAAGTGTTTGCTCAAAGGCACAGTGACAGATTTGCCATTTTGTCAGCTCCAGGATTGGAACCATCCCCCTTTtgggttattggcccaacgctctaacctcaaGGCTATTTGTCTTTCCCAGAGTGTTGTTTTCAATGACAGACAGGCCCAGGTTGGTGCAAGTTTCTCCACACGTCCAGAAGCTCCTGAGGAGTGTTGAGGATGGTTGTGATAACAGCCATGTAGTGACAGCGGTCCTGGGCTCCTGCATACCCCTGAAAAAGGTTTCCACTGGGGGGGTCAGTTGGCCGGATGCCCAGGTGTCTCATACACAGTCCCAGATACACATCCTCTATGTAGACGGCTTTAACATGCCTGGACGCCTCCACCAGCTTCCTGGGGAGGTCTAAGGTGAAGACATAGCCCAGGCCCAGAGCATAAGGTGGATATACCGGTTCAGGAAACACCTCCTTTGGAAGGTACCATTTGGAGTTATGGTCTCTTAGAACAGCGCCCCGTCGGGCCACTAGTCCAGTCTGGTAGTTCTGCTTTGGAGCGTGAAGCAGCATGTTGACCAAGGTGTTCACGTTGAGGAACATGTCTGAGTCGATCTTCATGGCGTAGGAGGCGTTGGGGCAGCGAGAGCTCAGCCACTCCATCATCACCATGGTCTTGATGGTCAggtttttgtagctgtctatgaAGTCGCTCTGCAGCAGATCCTGGTGCTCTTTGCTCTCCTGCAGCACCTTCTCCTGGAGctgctctgtctcctctccactgGGCAGTCCCAGCAGGAAGAACAGACGGACCTCTTTGCCCAGTACCTGCCTCTCACTGCCCCAAGTCCTGCGGACGGCCTCACGGGCCTCCCTGTTATAGGGCGCCACTGGCACCATCAGAACCAGGAAGGGGTTCTGCTCCCGGCATTTCTCTGGCTCATCCAGGATGAAGGAGTACTCATGTGGGTATTGTACATGGTACGGTCCTCGGGACACGTACGGGGGAGGAGCGGCCAGAATCGCAACTGACATGTTTGCTGCTGGCTTGGTTGTTGAAGGTGAGATCCTTTCTTTGAGGTCAACTGCCAGGATGACCACAATCATCATCACGACCAGGAACAGAAACAGGCAAAGGCAGCTGTTGCGACACCAGCGTCTCTTTTTGAGCTGTGTTTTGTC

Function

NR:

description
beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2282450 False 966 lncRNA 0.53 2 8008778 8038089
TU2282454 False 1331 lncRNA 0.51 4 8008778 8027927
TU2282445 False 1194 lncRNA 0.53 2 8026205 8038089
TU2282446 False 1194 lncRNA 0.53 2 8026205 8038089
TU2282449 False 1194 lncRNA 0.53 2 8026205 8038089
TU2282451 True 1600 lncRNA 0.51 2 8026205 8027927

Neighbor

gene id symbol gene type direction distance location
LOC110519426 LOC106587985 coding downstream 43759 7943252 ~ 7965019 (-)
LOC118944417 LOC106587940 coding downstream 70949 7926602 ~ 7937829 (-)
LOC118944418 NA coding downstream 78677 7928632 ~ 7930101 (-)
LOC110514892 NA coding downstream 107132 7900918 ~ 7901646 (-)
LOC118944444 LOC106587932 coding downstream 126867 7880262 ~ 7881911 (-)
LOC110518910 LOC106587992 coding upstream 32940 8071029 ~ 8089570 (-)
LOC118944485 NA coding upstream 41367 8079456 ~ 8080950 (-)
LOC118944463 LOC106562776 coding upstream 58885 8096974 ~ 8105982 (-)
LOC118944505 LOC105029587 coding upstream 91239 8129328 ~ 8143363 (-)
LOC110527031 LOC106587988 coding upstream 526211 8564300 ~ 8805872 (-)
G1994294 NA non-coding downstream 20645 7986927 ~ 7988133 (-)
G1994289 NA non-coding downstream 31187 7971316 ~ 7977591 (-)
G1994290 NA non-coding downstream 31504 7975261 ~ 7977274 (-)
G1994243 NA non-coding downstream 84549 7912947 ~ 7924229 (-)
G1994247 NA non-coding downstream 96414 7887754 ~ 7912364 (-)
G1994319 NA non-coding upstream 20398 8058487 ~ 8060137 (-)
G1994320 NA non-coding upstream 21069 8059158 ~ 8060038 (-)
G1994322 NA non-coding upstream 23938 8062027 ~ 8062510 (-)
G1994334 NA non-coding upstream 81123 8119212 ~ 8120344 (-)
G1994341 NA non-coding upstream 106950 8145039 ~ 8148488 (-)
LOC110515105 LOC106593850 other downstream 135762 7863456 ~ 7873075 (-)
LOC118944558 LOC106595801 other downstream 202924 7802643 ~ 7809933 (-)
LOC110526845 LOC106592787 other downstream 257401 7744309 ~ 7751407 (-)
LOC118936603 LOC106587968 other downstream 343646 7647283 ~ 7665132 (-)
G1994075 NA other downstream 619210 7389245 ~ 7389568 (-)
LOC110516734 LOC107593117 other upstream 1054991 9090166 ~ 9108249 (-)
G1994674 NA other upstream 1138949 9177038 ~ 9180705 (-)
G1994786 NA other upstream 1409504 9447593 ~ 9448494 (-)

Expression


Co-expression Network