G1993699


Basic Information

Item Value
gene id G1993699
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8464452 ~ 8466280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2281570
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctaggtaggatcactgctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagttaggatcacCCCTCTAGATAGGATTACtactctagataggatcactactctagataggatcacccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCTCAcactgctctagttaggatcacccctctagataggatcactgcTCTAGATAGGATCACTTCTCTTTATTAAGCAGAAACCCccacactgctctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281571
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctaggtaggatcactgctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagttaggatcacCCCTCTAGATAGGATTACtactctagataggatcactactctagataggatcacccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCTCAcactgctctagttaggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcactactctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctttattaagaagAAACCCCCACACTGCTCTAGATacgatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcACTgatctagataggatcactgctctttattaagacGAAACcccatcactgctctagataggatgactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCCAACACTGTTCTAGATAGGATCACTTCTCTTTATTAAGCAGAAACCCccacactgctctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281572
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctaggtaggatcactgctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagttaggatcactgctctagataggatgactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaAGAAACCCccacactgctctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281574
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCTCAcactgctctagttaggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCCCACACTGCTCTAGATacgatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcACTgatctagataggatcactgctctttattaagacGAAACcccatcactgctctagataggatgactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCCAACACTGTtctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281576
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctaggtaggatcactgctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagttaggatcacccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcacccctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCTCacactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcactactctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcACTgatctagataggatcactgctctttattaagacGAAACcccatcactgctctagataggatgactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCCAACACTGTTCTAGATAGGATCACTTCTCTTTATTAAGCAGAAACCCccacactgctctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281577
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctagataggatcacccctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCTCAcactgctctagttaggatcacccctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcactgctctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281578
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcactactctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcactactctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatCACTGCTCTAGATacgatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctttattaagaagaaacccctacactgctctagataggagcACTgatctagataggatcactgctctttattaagacGAAACcccatcactgctctagataggatgactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaAGAAACCCccacactgctctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat
>TU2281579
GTTAAAGTATTTTTTCTTACGTAATTTACACCACTTCTATTAAGCCTGCCTACGTGTGCTGTAGAGCTCTTTGTTGCAGGTGcctggtaacagttgaataagatGAGAACAAAGAAGAAACCCACACACCGCTCTAGTTAGGATCAcccctctagataggatcactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgctctttattaagaagaaaccctcacactgctctagataggatcactgctctagataggatcactgctctttattaagaagAAACCCCAACACTGTtctagataggaccactgctctagataggattactgctctttattaagaagaaaccccaacactgctctagataggatcactgctctagataggatcactgcattggagtaaaacaatatTCTATTTGGGGTTCTAATGAGGTACGACAGtttaactaagctcatgaggcgtttatcagttatattcttcaaggaTCAATGGATGtatcaactgctgattgcccctgtAATACGTGCTTGTTTCCTTTGCAGTGGGGTCTGTTTGTATGAGTTaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2281570 False 955 lncRNA 0.43 2 8464452 8466280
TU2281571 False 1670 lncRNA 0.42 3 8464452 8466280
TU2281572 False 847 lncRNA 0.42 3 8464452 8466280
TU2281574 False 1046 lncRNA 0.41 4 8464452 8466280
TU2281576 False 1367 lncRNA 0.42 5 8464452 8466280
TU2281577 False 840 lncRNA 0.42 5 8464452 8466280
TU2281578 False 1129 lncRNA 0.41 5 8464452 8466280
TU2281579 True 638 lncRNA 0.41 4 8464452 8466280
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Neighbor

gene id symbol gene type direction distance location
LOC118944501 LOC106593603 coding upstream 4347 8377039 ~ 8461168 (+)
LOC110526874 LOC106587947 coding upstream 114886 8290443 ~ 8349566 (+)
LOC110526872 LOC106587948 coding upstream 188317 8202519 ~ 8276135 (+)
LOC110526843 LOC106587945 coding upstream 276427 8148660 ~ 8188025 (+)
LOC110526841 LOC106587964 coding upstream 315953 8143737 ~ 8148499 (+)
LOC118944559 NA coding downstream 8899 8475179 ~ 8478193 (+)
LOC110512379 LOC106587994 coding downstream 71633 8537913 ~ 8553492 (+)
LOC118944551 NA coding downstream 94327 8560607 ~ 8564393 (+)
LOC118944552 NA coding downstream 129632 8595912 ~ 8596441 (+)
LOC118944519 NA coding downstream 366003 8832283 ~ 8834831 (+)
G1993690 NA non-coding upstream 84606 8379469 ~ 8379846 (+)
G1993681 NA non-coding upstream 105101 8358497 ~ 8359351 (+)
G1993677 NA non-coding upstream 111901 8352253 ~ 8352551 (+)
G1993675 NA non-coding upstream 116600 8344294 ~ 8347852 (+)
G1993734 NA non-coding downstream 117893 8584173 ~ 8585082 (+)
G1993745 NA non-coding downstream 126832 8593112 ~ 8595082 (+)
G1993762 NA non-coding downstream 178526 8644806 ~ 8645360 (+)
G1993766 NA non-coding downstream 185970 8652250 ~ 8653286 (+)
G1993593 LOC106587964 other upstream 315953 8143752 ~ 8148919 (+)
G1993550 NA other upstream 422431 8038186 ~ 8042021 (+)
G1993521 NA other upstream 504988 7958777 ~ 7959464 (+)
G1993435 NA other upstream 754687 7706117 ~ 7709765 (+)
G1993431 NA other upstream 795977 7664992 ~ 7668475 (+)
G1993771 herc1 other downstream 200321 8666601 ~ 8668267 (+)
G1993783 NA other downstream 230894 8697174 ~ 8698123 (+)
G1994757 LOC106613263 other downstream 924288 9390568 ~ 9390933 (+)
G1994851 NA other downstream 1098763 9560723 ~ 9566154 (+)

Expression

G1993699 Expression in all Baseline Samples

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G1993699 Expression in each Bioproject

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G1993699 Expression in each Sample
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Co-expression Network