XLOC_000039 (si:ch211-132g1.6)


Basic Information

Item Value
gene id XLOC_000039
gene name si:ch211-132g1.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1896737 ~ 1899848 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000076
TTTTCTTTAGTCGATTATCAAAAGGTTTGAGTATTTGCTGTATTCAGTAGAGCAATGAGCTGCCAACACAATCTCTTGCTTTTATTCCTCTGTGACTTCGCCGCGCTCACTGTCTCAGCACAGACATGTGGAGAACAAGTGCTAGAAGGAACATCCTGCAGCATTTATGGAAAAACAAGAAACAATGAAAAAGCTGCAGATATCAGATGGGCCTTTACCTCCAGTAATGGAAACTCAGCTGAATGGAAAAAAGGATCCAGGAGAAAACCTCCAGCAGGATTAACAATAGAAGAAGACGGATCTTTACGATTTATAAGTGTTGATCAGAGTAACACCGGCACATATAAATACAAAGCTTTTAATGCCAATGGCCAACAGATTGGGGATGAAactgtggaactgaaagtttatGCGAAGACTCCTAAACCTACTGTGAAGCGTGAATGCACAACTAATAGCGTAATACTCATCTGTGACACTGCAAACTATAAAGATCTGAATATATTCTGGTATGAAGATGACAAGATCCTGAAGGATGAAACAAAACCTTATCTTACGTTAATGCGGTCTAAAATGAAGAAGAACAAAGGGTACTCATGCAGTgTGCAGTCCTCTCCAGTCAGCAGAGAACATAGCAACAGAATTACAGTCTCAAGTAGCAGTCCAGGCCTTTGCTTAGATTTCTGGGTTATGCTGAGCATTTTAGCAGGTGGAGGAGCTCTTCTGCTTCTCCTATTATCTGTTCTCATCTGCTGTGCATGTCGAAGTTATGGTCAACACAAGAAGAACCAACCAA
>TCONS_00000077
gacagatagacagatagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagacggaccgacggattaatggatggatggatggatggatggatggatggatggatggatggatggatggatggatggatggatggatggatggatggacgggtggatgggtggatagattgatggatggatagatagataggtaactGAAGGAAAAACTGATGTaacaatagaaaaataaatacaagtaatACATGATTTAATACAACAGGATTAAActcaataaaataattgaaatatctaggtcaataaattaattatttgtaattattatgtttttaatccatattttattatttaaactgtaatttttatttgtttttctatttatttaagcatttattgTTATATTGATTTCTGTTTTTCTATTTACTTATTACcgtattgatttatttacttatttatttgtatgttaatttattttagctTGGTTAGGATTaaatataattcaaaataaaatttatctgtaatatattatatgtgtatattatgtattatatataggTGCAGTCCTCTCCAGTCAGCAGAGAACATAGCAACAGAATTACAGTCTCAAGTAGCAGTCCAGGCCTTTGCTTAGATTTCTGGGTTATGCTGAGCATTTTAGCAGGTGGAGGAGCTCTTCTGCTTCTCCTATTATCTGTTCTCATCTGCTGTGCATGTCGAAGTTATGGTCAACACAAGAAGAACCA

Function

symbol description
si:ch211-132g1.6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD2 (CD2 molecule).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-469 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD2 (CD2 molecule).

Ensembl:

ensembl_id ENSDARG00000093102

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000076 False 796 mRNA 0.41 5 1896737 1899848
TCONS_00000077 True 791 lncRNA 0.31 2 1898909 1899843

Neighbor

gene id symbol gene type direction distance location
XLOC_000038 atp1a1a.5 coding upstream 46633 1838164 ~ 1850104 (+)
XLOC_000037 atp1a1a.3 coding upstream 81077 1805294 ~ 1815660 (+)
XLOC_000036 atp1a1a.1 coding upstream 99905 1712140 ~ 1796832 (+)
XLOC_000035 atp1a1a.4 coding upstream 190578 1689775 ~ 1706159 (+)
XLOC_000034 NA coding upstream 277423 1617203 ~ 1619314 (+)
XLOC_000040 si:ch211-132g1.4 coding downstream 4571 1904419 ~ 1911381 (+)
XLOC_000041 si:ch211-132g1.1 coding downstream 16119 1915967 ~ 1923253 (+)
XLOC_000042 si:ch211-132g1.7 coding downstream 41183 1941031 ~ 2000357 (+)
XLOC_000043 NA coding downstream 101868 2001716 ~ 2005632 (+)
XLOC_000044 NA coding downstream 123561 2023409 ~ 2023645 (+)
XLOC_000032 NA non-coding upstream 318486 1571847 ~ 1578251 (+)
XLOC_000031 NA non-coding upstream 535906 1358731 ~ 1360831 (+)
XLOC_000030 NA non-coding upstream 554500 1315289 ~ 1342237 (+)
XLOC_000029 CR450787.2 non-coding upstream 677932 1218691 ~ 1218805 (+)
XLOC_000049 CR352215.1 non-coding downstream 375757 2275605 ~ 2275742 (+)
XLOC_000051 CR352215.2 non-coding downstream 503255 2403103 ~ 2403224 (+)
XLOC_000053 NA non-coding downstream 1818818 3718666 ~ 3720603 (+)

Expression


Co-expression Network