G1994865 (LOC106562818)


Basic Information

Item Value
gene id G1994865
gene name LOC106562818
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9540385 ~ 9542073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2283249
CGGGTAGCCAGCAGACATAGACTGCATGGTGGAGAAGGCCAGCCCGCCTGGCATTTTATACTCTCTGGCGATTATGTTCTCGATTGCGAACGGGTGTTTGAAAGTTGACGGTTGGTGAGAGACTCCTATGTTGTAACCGGACATTTGCGGGAGATGTGTGCCGGAAGCAGCCAGAGCGCTCAGTCGGAGTTTGGCTTGTTGTTGGAGATAGTGGGCAGCGTCCGACGGCTTGCTTTGCGCCAGGTGCTCGGACGCCATCATCATCAACTTGAAGCGTTTACGACGCCGCAAGAAACTTCCGTTCTCGAACATGTCCCCGCAGCTGGGATGGAGAGCCCAGAAACTCCCTTTACCCGGCTGGTCCGGCCGCCTGGGGATTTTAATAAAACAGTCGTTGAAAGAGAGGTTGTGTCGTAAGGAGTTCTGCCACCGCTGAGTGTTCTCTCGGTAGTAAGGGAACCTGTCCATGATGAACTTGTAGATCTCGCTGAGCGGGAGCATCTTCTCCGGGCAGGACTGGATAGCCATGGCGGTCAGGGAGATGTAGGAATAGGGAGGTTTCTGGTCGCTATACGTGTTTCTCCCCGGACGAGGCATTCTGTTGGACTTTCTGTCTAAATACAATGCTGAATGGCGCGTCAGACTACAGTTCTTCTAGTTTTTCTCGGACAAACAGGAAAAATAGAACTTTGTCCTACACTCCTTGAAAGAAGTATCACTCTGGGACGGGTTGTTCAAAACAACTGTTCAAAACAACATTACGAAAGCGTAAAACTCCATGCAATCGCCTCATAGATTGTCTTTATAACGcaaagtacaaaaaaaaaaaaaaaatgcaatatcCCCGCGCTTAAAAGTTACTGAAAGTTCCCCAAGATGCATGAAATACAGCAACGCAACTCACTGTCTGTTTCCTCCGTGGACTGTTCACTCAGCGCTTATGGGCTGTGGGTCTTGAAAACAGCCGTCCTATGAAAACAGTCTCGTTCTCTCCCTTCAGATGGCCTATATGATGCGCTATCTTTAGTTAAGCAAGCAGCAATAAGCTTCTctttcccccccacacacacacacacaccacgactCTCTGAATGGTTCCCGATATGTTGTGGCCCTTGTTGTGATGAGCAGAGCTAAGTAGCTGCTATTTCCATGTCCTTCCCCGAACCGTGTGATAGTTTAATGTGATGACAGGAGAAAAGACCCCCGTAGAGCCGCTTCATTAATGTGCCACTTCTTCGCTATCACATGACAATCGCcttgggtggagaggaggagggggggctaCTCGCTCGGAGGAGAAAGCAAAGGCATAATCTGGATTCATTTACACCTATTTACATGGACACCTTGAGCCAATAGAAATGATTTCCATTTGAAGACAGAGCGAAGGGGTGAAAAGGCACAGCGACCCACCGGATTTGAAGTGTGAGGGAGGGTGATGAAAGCCCGGTTTACGCCGTGTGAAGGTATGCAGATAACCTTTTGTGCACCGAGCAAGGGGTGCTTAGTCAACTATTTGCGTTTACAAATAGAGCTACTAAGCAATTTGATGTTTGGCATGGAGGGCCGTCGCTTCTTGGCGCAGTCTCTCTATTTGTTCTGTATAGTCCGttgtaagttttttttttttcgtgTTGAATGACGTGTCATTGATTACATTTTAGTTTCAGCTGTTTTATAGGGGGA

Function

NR:

description
forkhead box protein B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2283249 True 1689 lncRNA 0.48 1 9540385 9542073

Neighbor

gene id symbol gene type direction distance location
gtf2a2 gtf2a2 coding downstream 145971 9391961 ~ 9394414 (-)
otud7a LOC106591491 coding downstream 155394 9258976 ~ 9384991 (-)
LOC110516734 LOC107593117 coding downstream 432136 9090166 ~ 9108249 (-)
LOC118944560 LOC106587999 coding downstream 467043 9043417 ~ 9073342 (-)
LOC110500985 LOC106595573 coding downstream 503999 9025778 ~ 9036386 (-)
LOC110506256 LOC106561895 coding upstream 578977 10121050 ~ 10126999 (-)
fhl5 LOC106561894 coding upstream 625036 10167109 ~ 10184060 (-)
fut9a LOC106561893 coding upstream 671461 10213534 ~ 10225704 (-)
manea LOC106561892 coding upstream 686271 10228344 ~ 10238666 (-)
syt14a syt14 coding upstream 765224 10307297 ~ 10440791 (-)
G1994832 NA non-coding downstream 11020 9529149 ~ 9529365 (-)
G1994807 NA non-coding downstream 49119 9487034 ~ 9491266 (-)
G1994802 NA non-coding downstream 63569 9476596 ~ 9476816 (-)
G1994801 NA non-coding downstream 66333 9473619 ~ 9474052 (-)
G1994800 NA non-coding downstream 67016 9473089 ~ 9473369 (-)
G1994879 NA non-coding upstream 31541 9573614 ~ 9574079 (-)
G1994902 NA non-coding upstream 65966 9608039 ~ 9608313 (-)
G1994915 NA non-coding upstream 82325 9624398 ~ 9624708 (-)
G1995097 NA non-coding upstream 118346 9660419 ~ 9678255 (-)
G1995101 NA non-coding upstream 120747 9662820 ~ 9690237 (-)
G1994812 NA other downstream 38732 9500716 ~ 9501653 (-)
G1994786 NA other downstream 91891 9447593 ~ 9448494 (-)
G1994674 NA other downstream 359680 9177038 ~ 9180705 (-)
LOC110527031 LOC106587988 other downstream 791641 8564300 ~ 8805872 (-)
G1996632 NA other upstream 1379943 10922016 ~ 10924533 (-)
G1996949 NA other upstream 1876026 11418099 ~ 11418335 (-)
G1999856 NA other upstream 3795262 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 3978613 13520686 ~ 13521520 (-)
G2000052 NA other upstream 4087711 13629784 ~ 13630075 (-)

Expression


Co-expression Network