G1995453 (syt14)


Basic Information

Item Value
gene id G1995453
gene name syt14
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10343777 ~ 10344091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2283940
CTCTGGGCTAAGCACAGCTGTGCTGTCGCTGGGTATGTCCTCCTCATACCCCTTGTTTAggtaactctctgtctcctgtccatTGCTGGCCTCGCTCGGACACTTGCCGTAGGAGTGATGGGGACTGTCGCTGTTTTGGGACAGGTTGCACTTGGCGTCGCCCAGGTCTGATGGTGTGTAGGACATCCGCGGGGAGCCGTCCTCGTCCTGGTACGGTGGTGGTTGAAGCTCATCCAGCGGGGGCGTTCGCCTCATCCTCTGGATGCAGTTCGCTGTTTggggggaaggagaagagatcATCAAACACAAACAAAA

Function

symbol description
syt14 Predicted to enable identical protein binding activity and phospholipid binding activity. Predicted to be integral component of membrane. Implicated in autosomal recessive spinocerebellar ataxia 11.

NR:

description
synaptotagmin-14-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2283940 True 315 lncRNA 0.57 1 10343777 10344091

Neighbor

gene id symbol gene type direction distance location
gnmt gnmt coding upstream 61670 10268951 ~ 10282107 (+)
LOC110506240 NA coding upstream 377816 9944809 ~ 9965961 (+)
LOC110506241 LOC106561900 coding upstream 425482 9845927 ~ 9918295 (+)
si:ch211-266g18.10 LOC106561896 coding upstream 531679 9707454 ~ 9812098 (+)
LOC110526863 LOC106562818 coding upstream 800504 9540286 ~ 9543273 (+)
daam2 daam2 coding downstream 670908 11014999 ~ 11241714 (+)
spdya spdya coding downstream 2494197 12838288 ~ 12845477 (+)
wdr43 LOC106561875 coding downstream 2518898 12862989 ~ 12899263 (+)
LOC110515264 LOC106583873 coding downstream 3203840 13547931 ~ 13554393 (+)
LOC110506268 LOC106562017 coding downstream 3224281 13568372 ~ 13718686 (+)
G1995450 NA non-coding upstream 2619 10340924 ~ 10341158 (+)
G1995449 NA non-coding upstream 3142 10340332 ~ 10340635 (+)
G1995444 LOC106570654 non-coding upstream 10528 10332819 ~ 10333249 (+)
G1995427 NA non-coding upstream 32679 10310877 ~ 10311098 (+)
G1995425 NA non-coding upstream 33629 10309785 ~ 10310148 (+)
G1995457 NA non-coding downstream 5419 10349510 ~ 10349749 (+)
G1995459 LOC106581475 non-coding downstream 8919 10353010 ~ 10353251 (+)
G1995462 NA non-coding downstream 12868 10356959 ~ 10357188 (+)
G1995463 NA non-coding downstream 13496 10357587 ~ 10357794 (+)
G1995464 NA non-coding downstream 13887 10357978 ~ 10358753 (+)
G1994851 NA other upstream 777623 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 952844 9390568 ~ 9390933 (+)
G1993783 NA other upstream 1645654 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 1675510 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 1792410 8537913 ~ 8553492 (+)
G1998628 NA other downstream 2877946 13222037 ~ 13222681 (+)
G2002614 NA other downstream 5345677 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 5451041 15734525 ~ 15800073 (+)
G2002823 NA other downstream 5727896 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 6268394 16609650 ~ 16614319 (+)

Expression


Co-expression Network