G1995459 (LOC106581475)


Basic Information

Item Value
gene id G1995459
gene name LOC106581475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10353010 ~ 10353251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2283946
gccctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccctttgtgagaccatatgctggtgcggttggccctgggttcctcctaatgcaagacaatactagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggactggcccgcccgttccccagacctgaatccaattgagcacatctgggacatcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2283946 True 242 lncRNA 0.55 1 10353010 10353251

Neighbor

gene id symbol gene type direction distance location
gnmt gnmt coding upstream 70903 10268951 ~ 10282107 (+)
LOC110506240 NA coding upstream 387049 9944809 ~ 9965961 (+)
LOC110506241 LOC106561900 coding upstream 434715 9845927 ~ 9918295 (+)
si:ch211-266g18.10 LOC106561896 coding upstream 540912 9707454 ~ 9812098 (+)
LOC110526863 LOC106562818 coding upstream 809737 9540286 ~ 9543273 (+)
daam2 daam2 coding downstream 661748 11014999 ~ 11241714 (+)
spdya spdya coding downstream 2485037 12838288 ~ 12845477 (+)
wdr43 LOC106561875 coding downstream 2509738 12862989 ~ 12899263 (+)
LOC110515264 LOC106583873 coding downstream 3194680 13547931 ~ 13554393 (+)
LOC110506268 LOC106562017 coding downstream 3215121 13568372 ~ 13718686 (+)
G1995457 NA non-coding upstream 3261 10349510 ~ 10349749 (+)
G1995453 syt14 non-coding upstream 8919 10343777 ~ 10344091 (+)
G1995450 NA non-coding upstream 11852 10340924 ~ 10341158 (+)
G1995449 NA non-coding upstream 12375 10340332 ~ 10340635 (+)
G1995444 LOC106570654 non-coding upstream 19761 10332819 ~ 10333249 (+)
G1995462 NA non-coding downstream 3708 10356959 ~ 10357188 (+)
G1995463 NA non-coding downstream 4336 10357587 ~ 10357794 (+)
G1995464 NA non-coding downstream 4727 10357978 ~ 10358753 (+)
G1995626 NA non-coding downstream 229264 10582515 ~ 10582807 (+)
G1995628 NA non-coding downstream 231074 10584325 ~ 10585374 (+)
G1994851 NA other upstream 786856 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 962077 9390568 ~ 9390933 (+)
G1993783 NA other upstream 1654887 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 1684743 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 1801643 8537913 ~ 8553492 (+)
G1998628 NA other downstream 2868786 13222037 ~ 13222681 (+)
G2002614 NA other downstream 5336517 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 5441881 15734525 ~ 15800073 (+)
G2002823 NA other downstream 5718736 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 6259234 16609650 ~ 16614319 (+)

Expression


Co-expression Network