G1995628


Basic Information

Item Value
gene id G1995628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10584325 ~ 10585374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2284124
TACAAAACAATCATAAAAAttgcaataatttaataataaaaacaaaagaTGGAGTACATTTTACACAAAGTATCAGTGACAGGAGTAAAACTTAAAACATAGTCCAACCAACATaacttgttctttgttgataatGTTGAAACATTTAAAACGGTTTAATTTAATCAGAATCTAGAAAAGTACCATAGCTGCATTAAAACAATGCTGCACTCAAGTGGTCTGGTGAAACCATTTGTGACTGGTGTAGCCTCAGATCGAGTACAGAGTTAAATTCTAACAGACAGTTGGACAATTTTCTGGAACACACTAACCATTTTCCAGTAGTTCACATACCTGTTCTGTAGAAAGATGTGAACATAATGTACCATTTTACTGTAGATGGTGAAAGTGTGATGATTTA
>TU2284122
TCAGTGACAGGAGTAAAACTTAAAACATAGTCCAACCAACATaacttgttctttgttgataatGTTGAAACATTTAAAACGGTTTAATTTAATCAGAATCTAGAAAAGTACCATAGCTGCATTAAAACAATGCTGCACTCAAGTGGTCTGGTGAAACCATTTGTGACTGGTGTAGCCTCAGATCGAGTACAGAGTTAAATTCTAACAGACAGTTGGACAATTTTCTGGAACACACTAACCATTTTCCAGTAGTTCACATACCTGTTCTGTAGAAAGATGTGAACATAATGTACCATTTTACTGTAGATGGTGAAAGTGTGATGATTTAGGACATTTACATCTGGTGTcggtgcacacaaaatgtacacaCTCTAAAAATAAACACTAAGATAATGTAAGCAACACTAAAGATTATGCTAACACAGCCGTGGAGCATTAAGCGCTTATGCTCACCATTGAACACCATTGTAATACAATTGGGGCCATATTAGCAACTAGTTTTTTTTCCTGATGAAGAAAGTACAGATATGCAATAACAAGGTCACCTGGTATCCATATCGGATCCATGCTGTATTCTGCACATTGGAAACAACATTCAAGAGTCAGAATGTAGAGGAGTGTGGATTCAATATGGATAGCAGGCAAATAACAAGATGAAAGGTATCTGTCCACTAACAAGACATGTCAGACTCAACTGAATCTTCTGGGAAGGGGAAAAAACACTAGTTGTGAGCAAATGGTATGGGCATCCATAATATTGCACAACACTTAT
>TU2284123
ATATTAGCAACTAGTTTTTTTTCCTGATGAAGAAAGTACAGATATGCAATAACAAGGTCACCTGGTATCCATATCGGATCCATGCTGTATTCTGCACATTGGAAACAACATTCAAGAGTCAGAATGTAGAGGAGTGTGGATTCAATATGGATAGCAGGCAAATAACAAGATGAAAGGTATCTGTCCACTAACAAGACATGTCAGACTCAACTGAATCTTCTGGGAAGGGGAAAAAACACTAGTTGTGAGCAAATGGTATGGGCATCCATAATATTGCACAACACTTATATAATTTGCAGAGTAAGGTTTTTGTgcggggggaggggggagcaATCGCTGTGGATGAACACAGAGGAAAACAAACAGTGAACACTGACATTGCTGCCTCCTTGTCTCATGACTAACCTTATGCTAAGGGAGCATTACGCTGTCACGTGTTAACCTTGACCGCCCACATGAGTTACATTTCAGGCATTCACACCAGCACGAGCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2284124 False 400 lncRNA 0.32 1 10584325 10584724
TU2284122 False 772 lncRNA 0.37 1 10584397 10585168
TU2284123 True 494 lncRNA 0.43 1 10584881 10585374

Neighbor

gene id symbol gene type direction distance location
gnmt gnmt coding upstream 302218 10268951 ~ 10282107 (+)
LOC110506240 NA coding upstream 618364 9944809 ~ 9965961 (+)
LOC110506241 LOC106561900 coding upstream 666030 9845927 ~ 9918295 (+)
si:ch211-266g18.10 LOC106561896 coding upstream 772227 9707454 ~ 9812098 (+)
LOC110526863 LOC106562818 coding upstream 1041052 9540286 ~ 9543273 (+)
daam2 daam2 coding downstream 429625 11014999 ~ 11241714 (+)
spdya spdya coding downstream 2252914 12838288 ~ 12845477 (+)
wdr43 LOC106561875 coding downstream 2277615 12862989 ~ 12899263 (+)
LOC110515264 LOC106583873 coding downstream 2962557 13547931 ~ 13554393 (+)
LOC110506268 LOC106562017 coding downstream 2982998 13568372 ~ 13718686 (+)
G1995626 NA non-coding upstream 1518 10582515 ~ 10582807 (+)
G1995464 NA non-coding upstream 225572 10357978 ~ 10358753 (+)
G1995463 NA non-coding upstream 226531 10357587 ~ 10357794 (+)
G1995462 NA non-coding upstream 227137 10356959 ~ 10357188 (+)
G1995459 LOC106581475 non-coding upstream 231074 10353010 ~ 10353251 (+)
G1995630 NA non-coding downstream 11671 10597045 ~ 10597260 (+)
G1995631 NA non-coding downstream 13249 10598623 ~ 10598831 (+)
G1995633 NA non-coding downstream 14971 10600345 ~ 10600597 (+)
G1995637 NA non-coding downstream 20409 10605783 ~ 10606026 (+)
G1995640 NA non-coding downstream 26242 10611616 ~ 10611932 (+)
G1994851 NA other upstream 1018171 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 1193392 9390568 ~ 9390933 (+)
G1993783 NA other upstream 1886202 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 1916058 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 2032958 8537913 ~ 8553492 (+)
G1998628 NA other downstream 2636663 13222037 ~ 13222681 (+)
G2002614 NA other downstream 5104394 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 5209758 15734525 ~ 15800073 (+)
G2002823 NA other downstream 5486613 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 6027111 16609650 ~ 16614319 (+)

Expression


Co-expression Network