G1996526


Basic Information

Item Value
gene id G1996526
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10772306 ~ 10773616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2285072
ATTTCCAAaaccttcaaagtgtttcctttcaaatggtaccaggaatatgcatatccttgcttcagggcctgagctataggcagttagatttgggtatgtcattttaggcaaaaattgaaaaaaaggggcggatccttaacaGTTTGGTCATTacacaatgccaaagatgtctcaagttttgagggaacgtgcaattggcttgttgactgcaggaatgtctaccagagctgttgccgcttccaacatagttttagagaatttggcagtacgtccagctggcctcacaaccacagacgaCATGTATGGCTATGACAACTAACACAATTGCATTCTATCGCAAGCACAGAGACACCgtaatgagatcctgaggcccgttgtcaTACCATTAAtccgcctccatcacctcatatttcagaaTTATAATTCacggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatggcctgcatactcaccagacatttcacccattgagcatgtttgagatgGTCTGGATCAccttgtacgacagcgtgttccatattgcacagccattgaagaggagtagaacaacattccacaggccacaattaagtctgatcaactctatgcaaagaagatgtgttgcgctgcattacaccagatattgactggttttctgatccacgcccattttgttaaggtatctgtgaccaacagattcatatctgtattcccagtcatgtgaaatacatagattagggccgagtgaatttatttcaattgactgatttcgttatatgaactgtaattctttaaaattgttgcatgttgcgtttacatttctGTTCAGGAAATATGTGAAAATCTGAGGCCTGCACCTGACCCGGCAATATAGAAAATGCACTGTGGGCTACAGTTACAGATGGTCCCCCAAAAATTTGACAGGGGTGCAGGATTTATTTTGCCTGAGTTAGaaatgtttctgcttataatttccaacattttggtAGGCAATTTGTTAGTCAATGTGTCTGTAATTAGATACATGCAGTTTCTCATCTGTCATTCATTATATGTTGCCcaagaagactaaataaaccttTGCTCACCAGAATGTCATAAATCGATAGAGTTAATGCTTCAATCTAGTTTGCATCGGCACCTTTCATCTCGGCTTCCTTCGTGGAGAAAACACGTTTAGGGACCAAGTACAAAATGCAATAACTaaaaaaataattacattttaatttCCAATTTTGCAAATGACATCAGTTTAACCGgttgtaaggaaatagaaagctgtgaaaatgaccc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2285072 True 1311 lncRNA 0.40 1 10772306 10773616

Neighbor

gene id symbol gene type direction distance location
kcnk17 LOC106562019 coding downstream 38368 10693574 ~ 10733938 (-)
kcnk5a kcnk5 coding downstream 126424 10588470 ~ 10645882 (-)
zgc:85722 LOC106561887 coding downstream 225124 10455201 ~ 10547182 (-)
LOC110506249 NA coding downstream 319164 10451909 ~ 10453142 (-)
syt14a syt14 coding downstream 331515 10307297 ~ 10440791 (-)
LOC110506078 kif6 coding upstream 430 10774046 ~ 10873761 (-)
kif6 kif6 coding upstream 108588 10882204 ~ 10986615 (-)
LOC118944586 NA coding upstream 274803 11048419 ~ 11048572 (-)
mocs1 LOC100196496 coding upstream 478219 11251835 ~ 11301417 (-)
LOC118944497 NA coding upstream 549552 11323168 ~ 11325682 (-)
G1996525 NA non-coding downstream 1726 10770216 ~ 10770580 (-)
G1996524 NA non-coding downstream 2184 10769623 ~ 10770122 (-)
G1996521 NA non-coding downstream 7310 10764767 ~ 10764996 (-)
G1996507 NA non-coding downstream 33492 10738538 ~ 10738814 (-)
G1996485 NA non-coding downstream 61752 10710306 ~ 10710554 (-)
G1996531 NA non-coding upstream 10232 10783848 ~ 10784707 (-)
G1996532 NA non-coding upstream 11284 10784900 ~ 10785287 (-)
G1996533 NA non-coding upstream 11719 10785335 ~ 10785625 (-)
G1996544 NA non-coding upstream 30294 10803910 ~ 10804134 (-)
G1996545 NA non-coding upstream 30980 10804596 ~ 10804989 (-)
G1994812 NA other downstream 1270653 9500716 ~ 9501653 (-)
G1994786 NA other downstream 1323812 9447593 ~ 9448494 (-)
G1994674 NA other downstream 1591601 9177038 ~ 9180705 (-)
LOC110516734 LOC107593117 other downstream 1664147 9090166 ~ 9108249 (-)
LOC110527031 LOC106587988 other downstream 2023562 8564300 ~ 8805872 (-)
G1996632 NA other upstream 148400 10922016 ~ 10924533 (-)
G1996949 NA other upstream 644483 11418099 ~ 11418335 (-)
G1999856 NA other upstream 2563719 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 2747070 13520686 ~ 13521520 (-)
G2000052 NA other upstream 2856168 13629784 ~ 13630075 (-)

Expression


Co-expression Network