G1997291


Basic Information

Item Value
gene id G1997291
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 11644263 ~ 11653638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2285860
acgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcaccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttattttggaaccattccattgtagattttcctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagtgtgatgagctgtgttgcttttacgccaaacataacattttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaaaggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccctgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctacgcttttaacagacatctgagactatcacagtgcaggtgcatttatgcggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgctctgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatggcgttccacttcatgatcgtgtcccacttgttgttgattcttcacaaaaaaatgcagttttatatctttatgtttgaagcctgaaatgtggcaaaagatcgcaaagttcaagggggccgaatactttcgcaaggcactgtatacacatgTTCTGAATGGAcccagtctgcaacaccactaagcaagggacaccaccaagcaagcgacaccatgaagaccaggAAGCTCTCCAAACAGTTCAGGGACAAAGT

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2285860 True 1607 lncRNA 0.42 2 11644263 11653638

Neighbor

gene id symbol gene type direction distance location
LOC118944497 NA coding downstream 318581 11323168 ~ 11325682 (-)
mocs1 LOC100196496 coding downstream 342846 11251835 ~ 11301417 (-)
LOC118944586 NA coding downstream 595691 11048419 ~ 11048572 (-)
kif6 kif6 coding downstream 657648 10882204 ~ 10986615 (-)
LOC110506078 kif6 coding downstream 770502 10774046 ~ 10873761 (-)
LOC110506257 LOC106561882 coding upstream 384494 12038132 ~ 12419690 (-)
LOC110506258 LOC106561881 coding upstream 916559 12570197 ~ 12616568 (-)
LOC110506259 LOC106561880 coding upstream 1021926 12675564 ~ 12688280 (-)
LOC110506260 LOC106561879 coding upstream 1061665 12715303 ~ 12740943 (-)
LOC110506264 LOC106561878 coding upstream 1122855 12776493 ~ 12835289 (-)
G1997247 NA non-coding downstream 20507 11623533 ~ 11623756 (-)
G1997241 NA non-coding downstream 23229 11620796 ~ 11621034 (-)
G1997232 NA non-coding downstream 29713 11614303 ~ 11614550 (-)
G1997147 NA non-coding downstream 107512 11530993 ~ 11536751 (-)
G1997082 NA non-coding downstream 116341 11447956 ~ 11527922 (-)
G1999008 NA non-coding upstream 338307 11991945 ~ 11992317 (-)
G1999012 NA non-coding upstream 344446 11998084 ~ 12072555 (-)
G1999112 NA non-coding upstream 505734 12159372 ~ 12159650 (-)
G1999113 NA non-coding upstream 507480 12161118 ~ 12161328 (-)
G1999117 NA non-coding upstream 512813 12166451 ~ 12166683 (-)
G1996949 NA other downstream 225928 11418099 ~ 11418335 (-)
G1996632 NA other downstream 719730 10922016 ~ 10924533 (-)
G1994812 NA other downstream 2142610 9500716 ~ 9501653 (-)
G1994786 NA other downstream 2195769 9447593 ~ 9448494 (-)
G1994674 NA other downstream 2463558 9177038 ~ 9180705 (-)
G1999856 NA other upstream 1683697 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 1867048 13520686 ~ 13521520 (-)
G2000052 NA other upstream 1976146 13629784 ~ 13630075 (-)
G2000879 NA other upstream 2624503 14278141 ~ 14278746 (-)
LOC110506276 LOC106587060 other upstream 2979364 14613586 ~ 14678505 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G51576 NA unknown NC_047597.1 CM018543.1 23447908 ~ 23454217 (-)