G1999981 (LOC106572279)


Basic Information

Item Value
gene id G1999981
gene name LOC106572279
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 13522098 ~ 13523022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2288642
gcaaaggtgtttatttacaagtgattccggaacaaaaaacaacagtactgccatcaacgtctaccttatgggacagcttaaaaacaatgctgccccatccacagctcaatccaaaaaaatgccttccttagagactggagagaggctccttttgtagggctagcccctcccctcagaacaattaaccctaattaattaatcaattaacaatacaaacctacattttccatgaactaaacatactaaaggatatacattgcaacacggttttaaacaatatcacaacataacatttacaacattacatcactactgacactatctttcaatatgcccatatgcattaatgagccatttgggacaggcactataaagccaacccaattcccttagctcgggtccttttccagcatacccggaagctacagagatggagagagaggaacagaacaaacaaacaatgcgctcatccacaacattgataagtataataattattgtatctctcaaatatgaacattgacaagtgtgaaatgccttcaccaagacagaagttaatttgtgtgtcgacccacattgttaacttatggtataatggcgcagggaggagtgatgaatatgtgtgtgcgttaaagaaccaaatgctgcccgcggccagtgacggacttctacgtcacatgaccttcctcctctcctgaaGCGACCATGTTCGGGAGCCTTGATAGGTAGTCCGCAGTAACGTTCTCTTTTCCTGCCTTGTGACGGACACAGAACCTGAAGGGCTGGAGCTCCAGATACCACCTGGTCACACGAGAATTCCGGTCCTTCATGGTCTGGATCCAAGTCAGTGCTCTGTGGTCCGTGTGCAGGTCAAATTCCCTCCCAAGAAGGTAGTAACGGAGGCTATCTAGGGCCCACTTTATAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106572279

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2288642 True 925 lncRNA 0.44 1 13522098 13523022

Neighbor

gene id symbol gene type direction distance location
trmt61b trmt61b coding downstream 665434 12845479 ~ 12856664 (-)
LOC110506264 LOC106561878 coding downstream 686809 12776493 ~ 12835289 (-)
LOC118944583 NA coding downstream 730053 12791911 ~ 12792045 (-)
LOC118944582 NA coding downstream 740572 12781392 ~ 12781526 (-)
LOC110506260 LOC106561879 coding downstream 781155 12715303 ~ 12740943 (-)
LOC110506271 LOC106561903 coding upstream 795282 14318304 ~ 14368873 (-)
LOC110506081 prmt3 coding upstream 854396 14377418 ~ 14496552 (-)
LOC110506276 LOC106587060 coding upstream 1090564 14613586 ~ 14678505 (-)
LOC110506082 LOC106561908 coding upstream 1180086 14703108 ~ 14788733 (-)
LOC110506277 NA coding upstream 1371473 14894495 ~ 14898577 (-)
G1999974 NA non-coding downstream 9608 13512025 ~ 13512490 (-)
G1999962 NA non-coding downstream 10898 13491607 ~ 13511200 (-)
G1999858 LOC107575789 non-coding downstream 181317 13340296 ~ 13340781 (-)
G1999852 NA non-coding downstream 189907 13331919 ~ 13332191 (-)
G1999842 NA non-coding downstream 209390 13312487 ~ 13312708 (-)
G2000024 NA non-coding upstream 60201 13583223 ~ 13584752 (-)
G2000041 NA non-coding upstream 92458 13615480 ~ 13615686 (-)
G2000042 NA non-coding upstream 95617 13618639 ~ 13618874 (-)
G2000049 NA non-coding upstream 104005 13627027 ~ 13627379 (-)
G2000068 NA non-coding upstream 126017 13649039 ~ 13649244 (-)
G1999980 LOC106561221 other downstream 578 13520686 ~ 13521520 (-)
G1999856 NA other downstream 183947 13337335 ~ 13338151 (-)
G1996949 NA other downstream 2103763 11418099 ~ 11418335 (-)
G1996632 NA other downstream 2597565 10922016 ~ 10924533 (-)
G1994812 NA other downstream 4020445 9500716 ~ 9501653 (-)
G2000052 NA other upstream 106762 13629784 ~ 13630075 (-)
G2000879 NA other upstream 755119 14278141 ~ 14278746 (-)
G2003219 LOC106561912 other upstream 2192526 15715548 ~ 15718308 (-)
nav2a LOC106587075 other upstream 2432605 15900960 ~ 16211028 (-)

Expression


Co-expression Network