G2003819 (LOC106561933)


Basic Information

Item Value
gene id G2003819
gene name LOC106561933
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 16720991 ~ 16723682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2292784
CTGGTAGCCGGGTTGGTCTCAACCTCGCTGTCGGACAGTGTTCCCCTGGAGAGGTTGAGATGGGGGGCTTGCCTGCCACCCAAGCCCTCCCCAGCGGTGCTACTCAAGTCACTGTCAGCTCCCAGCGTCTCCCCTGAGCTGTTACTTATGGTTTTGACAACAGCCATTGTGCCAGGTGTGCTGGCCTCTGAGTCCTGGCTGGTGCTTCTGGTAAGGACTGGCGTTTCAGTGCCGGTCACAGACTCTGTGTCACTCTTCTGGGATCCAGAGGTGACACTGAGGCCACTGTCAGCACTGATCTGGGACTTCTTCTCCTCCGTGTCAGTCAGCTCAGGGTGCTGTTTCTTAGCCCCCTCCGCTCCTGCAGGATACATGTTGTCAGCACAGGTGCCATGCGCACTTCCACACTGCCCCCGTATGGAGTGTCACATGATTGGCAACTGGCGGAGAAGTGGGGGAGGGGGCTGGTGACCTAACTGCTATCGAAAGGCTTGCACACGTCGCACTGAATGTGGATTTAGCGTTCGTCTTCTGATTTGAATGACGACACTTTTCACACGATTCTCCATGTAAAATTGGTGCGCACTCGGTTCGCAAATTATGTTCAGAGGTGCAAGGTACTCTCGGCCAGCAAACGCTATTGGTGTGTCTGACCTCTAATACCATCACTTTGGGATTGACCGGAAATACTGGCCCTACAATAGGGACACTTCATTTAGCCAGAGGATCTTGCCTTTCTTTTTATGTTGTGGAATTCAatgaacaacagttacaacagctATGTCGTTTTTTTATATTCAGAAAGCAAAGAAATGTATAATAAATCAGTCATGTTCAGTAGGCCAAAACAGAGAGATCATATCTcatttgttttctgttgcaaaacattgttatgtgtgccctaatgaacatgacccagctgTCAGATTTCAATAGTCCAAGCATGTGACTATTCAGAGGCAAGTGGAGAATGCAAAATTAGTAGGAATATTGATAGATGTACATCAAACTGTAATTGACAAGGGCAGATACCAATATAAAAGAGGTCAAAGTTACAAAAATTGACATACAGACTCAGGCAGTTAGGCATGCAGACAAACTGAGGGACAGTCAAAATAGGAGACCATTTTCTGCACAAGTTTGCTTTTAGACAAGCATTGACCAACAGCGCTGTTGTTAATATACCAGTCAGTTGTTGCAGAAACACCTTGTTATGACTCACATAATGCACCTCTAGGAAAATGTTACTACAATTAAACAAATGCTGGCCTGCAATCTGTACATTTTGAAGAGTCCAGGATATCAAACCTTTACATTGGAAGAAAGTACAGTCAATTACAATGGTGCAAATGTACAAATGTTCAATGCAAATGTAACCATGACTTGACTTCTGTGATACATTTGGTCATGCAGCCAACAAACCTGCAAGAGATGTTTGTACTCTAACAAACTATTGTGTATTCATTCATGGCTCagttatgttttgtttttttgtacaaTTGAACTTCTTGCCATGTAGTGATTTTCCAGAAAAGCACATTTGCTAAATTAAAATGCCACAACTGACTTAACTTTGATAGAACCTCAAGAGCCCAGGAAAATAGGGAATGTTTGGGATTAGGTATGGGTCTGACAGACTACATTTCCAATGACTATTTCACAACTCAGTGAATAGGCAAACATATGACAGAGTAGCTCTATAGAAAGAAAGAGGAACTCCCTATATTATGACTCCTGATTTGAGATATGCAAGCGTAACTCAGTTATTCCACTGATATCAAGATATGATTCACCCCAAATTTACAAAACGTTACGTACACACCTCAAATCAAGA

Function

NR:

description
MAP kinase-activating death domain protein-like isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2292784 True 1834 TUCP 0.43 4 16720991 16723682

Neighbor

gene id symbol gene type direction distance location
arl14ep LOC106561931 coding downstream 103823 16614782 ~ 16617168 (-)
LOC110506296 LOC106587087 coding downstream 125577 16557278 ~ 16595414 (-)
LOC110506295 LOC106561927 coding downstream 269148 16441822 ~ 16451843 (-)
LOC110506294 LOC106561926 coding downstream 280448 16410814 ~ 16440543 (-)
LOC110506292 LOC106561923 coding downstream 451375 16235517 ~ 16269616 (-)
bbox1 LOC106561934 coding upstream 22529 16746211 ~ 16771997 (-)
LOC110506304 LOC106561935 coding upstream 49170 16772852 ~ 16774967 (-)
LOC110506306 LOC106561937 coding upstream 201559 16925241 ~ 17088370 (-)
mrpl21 LOC106561938 coding upstream 385578 17109260 ~ 17113196 (-)
LOC110506308 LOC106561939 coding upstream 396276 17119958 ~ 17162230 (-)
G2003728 NA non-coding downstream 184642 16535969 ~ 16536349 (-)
G2003702 NA non-coding downstream 208743 16512031 ~ 16512248 (-)
G2003585 NA non-coding downstream 251017 16395462 ~ 16469974 (-)
G2003574 NA non-coding downstream 400053 16320347 ~ 16320938 (-)
G2003529 NA non-coding downstream 460630 16259854 ~ 16260361 (-)
G2003881 NA non-coding upstream 60895 16784577 ~ 16785359 (-)
G2003885 NA non-coding upstream 67953 16791635 ~ 16791834 (-)
G2003886 NA non-coding upstream 68229 16791911 ~ 16792200 (-)
G2003905 NA non-coding upstream 79216 16802898 ~ 16803188 (-)
G2004314 NA non-coding upstream 365244 17088926 ~ 17089128 (-)
nav2a LOC106587075 other downstream 761426 15900960 ~ 16211028 (-)
G2003219 LOC106561912 other downstream 1002683 15715548 ~ 15718308 (-)
LOC110506276 LOC106587060 other downstream 2087383 14613586 ~ 14678505 (-)
G2000879 NA other downstream 2442245 14278141 ~ 14278746 (-)
G2000052 NA other downstream 3090916 13629784 ~ 13630075 (-)
G2005166 NA other upstream 1163763 17887445 ~ 17890081 (-)
G2005456 LOC106561978 other upstream 1470428 18194110 ~ 18199589 (-)
G2005584 NA other upstream 1510592 18234274 ~ 18234536 (-)
G2009991 NA other upstream 4910597 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 5679336 22402983 ~ 22405876 (-)

Expression


Co-expression Network