G2005493 (LOC106561986)


Basic Information

Item Value
gene id G2005493
gene name LOC106561986
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 18332637 ~ 18335953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2294605
caaatgtatttaatttcCCCAATATAAGAAATGAATAAAAGCTCTAATACAAAACATGGATATACGTCGATGACTGTGATTATAGGAAACAAGAATATTTTGTCACACAGGACAGTTGTGCACAACAGTGGGATTTATAGGGGAAACTATACATTGGAAGTGTACGTGTACAGCGTTAcacattatttcacatttatGTTGAACATGGACTTATTGTGCTACCAAAAGGAAGTCAACAGCAAAGACAAAACAGCATGTAAGACCAGAGTGAACCGCATTGCAGTTTTACCTCAACAGGTGTTGGACTAGGCCCTTCCAACACAGTTACAGTGCATTTCGAACTGACTTGTAAAGGCAGGTAAAGTTGCATTTCTGGATGACTCTGAGTGTGTCACGATGCACACAATCTAATATGTTGTACTATATTCACTGCATTGCACTTTTAAGATTTCAGTTTATGAAACACAAGAACATCATTATTATTGTATAGCATCGCTAGATTTGCCGCAGCTACGAAACAATAAGCAATAATGCTCATTGTCAAGTTATTAACACATCATTTTCAGCCCAAACGTGGCTTTGTTTATAGGGCTTGACATGACACACAAATTCTGACCACAAATAGAATATGTATTAACAAGTGATGAGAACGGCATTTGGTTTTTAAAAgccatttaacagactctcttcaAAGTCAAATCCATTCGATGATGATGATTGGGCACAAGAATGTAACGCAAGAAAAATAACCTGTTGATCTTTAATCTTTAGACGTTTCTGTCTAGTGCGAAGCATCTGTGCTGTCGTACATCTACATTCTGGTGAATCTCACAACAACTATTTAATAGTAGTCCTTCCACAGTTATACACATTATTGATAAAGCTATTCTAAATAAATACTCATCTCTTTCTAACTTTTATCCACAATGCCAGCAATGCAATCATGCGACTAATTCATTTATAAAATATTCTTTAAGGGTTCATCAGTGAGGATTTCACTTCACAACAAGGGATTTGGTAAGATAAATGAGGGAGAcaatgagaaagagaggggtggctGGAACAGAGATAACAAGTTCTGGGCCAAACGCAAAGGTGACAGGGGGTCATTGACTCCACAAATACGGTTTTATACACAAAATATGGACATTTTCTGCTGAGAGTACTTTTTTTCTGGGGTTTCAATGATGAACATAGCCTTATCTGAATAACTTAACAAAGTAACACAAGCCTTGAAAAACAACaagccatttggaaaaggaaagctcTTGATTTGTTAATCAGTGTTTCAAGTTACTATGGCTACAATGTTAAGCAGTCTAACAGTCTTAGACTTAGTGCTTGGCAGGCACAGTCATTTTTATACCATTTATACATAGATGACAGACATGTAAAGAACAGTTCAACTGGAGACAGTTTATCTGTACAATGAATACTCACAaccaaaaacaaaacactgaATAATAATTTGGAACCATTAAAAAGATTCCAGCATATCGAAAAATACAATGTGTCTAGACTGAATAATAACTTGTAAAAATGAATGGTTTATTTTATCATAATATCAAAGATGACAGTACTAAAGTATAGTAAACCCCTAATCACAGTCAACTGTGTGCTCATATTATTTGTCCTTCCCACCAATTGTCAAATACCATTGTATCTCTGCTACAAGGTATATTGTACTTTGATGTTAGCTGGCGAATGGGTCAAGCGCATAGTAATTTAGCTCGTGAACACCTAAAAAAGCTCTCCACAAAAAGAGGagtagcgagagaaagagaagaggaatgtGTGGCGGTACACGTTTAGAGACTGAAACAGAACAGTTTGGATCTAAATAGGCCTCAGCCCCCAGAGGGGAAACCTAATCATAGAGAATAGACAGTATTTCCAGCTCATATGAACGTGTTAATATCCAGAAACCATATAAAACCATATACCACAAAaataatttattttcaaataatagtgcaaaaaaaattacctactcttagaaaaaaattgtTCTAAAAGGATTCATCGGCTgtacccataggagaaccctatttggttctaggtagaacactttcaggttccatgtagaaccttctgtggaaaaggttctatgtggaaccaaaCGTGTTCAAAAGGGTCCTTCAAAGGGTTTTCTTACGGGGACAGCCgatgaacccttttaggttctagatagaaccTTTTTTAATAAGAGTGTATAACACTGGGGTATATTTATCAGTTGAAATTACTGGACATTTTACAGACTGTCGGAGTCCTAAAGTCAACTAAAtataaatcaaatattatttgcaGGTAGAACATATGAATAAAACCATATGGATATGTGATGGAATGTGAAATTAGCATTCTTTCTAGAGTGTTTTTTATCAAGAGCGATTCCATTTCAACACAACAAGAACCAACAGTACATACAGAATATCTATGTGAAACCACTTCAGGTTACCTctagtgtttttttgtgtgctaaAAACAGACTTTGATAATGCTTCCTAAATGCGTGAATGCCTCCTAAACTGAGACCATTGTACAGTATGAAGTGAATTCCCTCTGGACAGAAAGACCACACTCCCAGCCCCAGGTAACCAGTAGGAGCCCTGTGATTTCATGGCAGTGCCCCAgtagtaaagggagagagagtgaggagtggTGCGGGTAACATCGTGGGAGTCGGGGGGGGGCGCAGCTTGTCCAAGAGGTAGGGGGAAGGAAAGGAAGGTGCAGACTGAGTTCAGGTTCAACCCAAAGTTTCCGCTTCGGTCCAGAAAGTCCATCTCTTTTGATACTGCCTGTCATGCACAAAGGGACACTGGAAGAAGCAGAAGAGAGATTTCAGGCTGTCCTACTTAGACTGGGGTGGGGGGTGTGGCTGTCCACACGAAGAGCATTGGAGTGGACTAGCCCAGTCAGCTCTACAGGATTCTGTGTGCGACAGCCCGGGCTCTCTGGGGACTATGGCTGTCCTCCGAGGGGTGTTTGAGCAGGTCCATGGGCATCAGAGGGATGGGCTGGTTCTGCCTGCTCACCACCACCTCGTATGGGGGCGCCTCCTCCAGGGGGAACGCTGACTGGGAGATGGAGGATATTGGCTGCTGCCGGAGCTCGTGCAGTCCGATTGGGTAGTGGGAGGCGGCGGCACTGCTGGCGGACACCCAAGAGGCCCCGGCTCCAGCGGACGGCTCCTCCATCTCCAGGCTGGTGTAGGTGGCCTGCTGGTGGCCCCGCTGACAGGGGTCAATGAGGGAGTACGGAGGGGGGTCATCTGTGGGGACGTATATCTGTGTCGCACCTGGTCCCACACA

Function

NR:

description
PREDICTED: protein BEAN1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2294605 True 3317 lncRNA 0.41 1 18332637 18335953

Neighbor

gene id symbol gene type direction distance location
tk2 LOC106587284 coding upstream 7642 18320721 ~ 18324995 (+)
cmtm4 LOC106561981 coding upstream 20930 18283846 ~ 18311707 (+)
dync1li2 LOC106561980 coding upstream 50110 18260980 ~ 18282527 (+)
LOC110506342 LOC106561978 coding upstream 130933 18194242 ~ 18201704 (+)
LOC110506341 NA coding upstream 182420 18146844 ~ 18151206 (+)
cdh11 LOC106561988 coding downstream 437450 18773403 ~ 18857279 (+)
cdh8 LOC106561990 coding downstream 725179 19061132 ~ 19151036 (+)
LOC118944408 NA coding downstream 1293577 19629161 ~ 19631075 (+)
itfg1 itfg1 coding downstream 1335695 19671648 ~ 19791378 (+)
LOC110506357 neto2 coding downstream 1455999 19791952 ~ 19809048 (+)
G2005489 NA non-coding upstream 4209 18326282 ~ 18328428 (+)
G2005424 NA non-coding upstream 119451 18212986 ~ 18213186 (+)
G2005419 NA non-coding upstream 128178 18204158 ~ 18204459 (+)
G2005416 NA non-coding upstream 139743 18192317 ~ 18192894 (+)
G2005413 NA non-coding upstream 143706 18188424 ~ 18188931 (+)
G2005529 NA non-coding downstream 2782 18338735 ~ 18338948 (+)
G2005533 NA non-coding downstream 9459 18345412 ~ 18345709 (+)
G2005549 NA non-coding downstream 30402 18366355 ~ 18366639 (+)
G2005554 NA non-coding downstream 34560 18370513 ~ 18370809 (+)
G2005556 NA non-coding downstream 36017 18371970 ~ 18372182 (+)
G2004946 LOC106587126 other upstream 451844 17870559 ~ 17880793 (+)
fshb LOC100136594 other upstream 1718455 16609650 ~ 16614319 (+)
G2002823 NA other upstream 2258593 16071987 ~ 16074044 (+)
LOC110506284 LOC106561914 other upstream 2532564 15734525 ~ 15800073 (+)
G2002614 NA other upstream 2636357 15689768 ~ 15696280 (+)
G2006213 NA other downstream 433180 18769133 ~ 18769500 (+)
LOC110506373 LOC106562010 other downstream 2143505 20479458 ~ 20482966 (+)
G2008616 NA other downstream 2377410 20713363 ~ 20713673 (+)
G2009636 NA other downstream 3277081 21613034 ~ 21613429 (+)
G2009769 NA other downstream 3501770 21837723 ~ 21838158 (+)

Expression


Co-expression Network