G2008038 (LOC106562006)


Basic Information

Item Value
gene id G2008038
gene name LOC106562006
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 20192675 ~ 20197104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2297266
aacatttattagCTTAACATGAGTATACATTTTTACATAACTCTGTAGGCAGATAGCTCATCAATAGAAAAATGTGACTGTTCCGTTGCTTTAGCATTGATTTAATGCCTTTGTCAGCCCCCGCTGACCCCTTTTCTTTCTTGCATAGAATGTGTAACGTTAATCTATGTGACGGCGACCGAAACAAAAACAGGGATATCGATAGGAAGAAAACATACAACCCCTCGCAATATTACCATTAAACAACTTTACCTAAGCACTCTAAATCGTCCCAACAAAATCTGAGACAAAACCTTTCCTGTAGCTCTCTGAAATGGAACATAAAGGCATCAATCATGACATTAACCCTTGAGAATCACCTTCGGACACAATTGTAGGTAACTGTCTGTAAGCAGGTGTATGTTTTTGGGTCAATCCTCTTGTACCTGCACTATTAAAACATCACTACTATTAGTATGCTATTCCACGCTAAGGCGAAATAAACCCCATCATTCATTTTACAACCCAGGTCGtattttggtacagtattagatgtagCTGAGATTGGGAAATAAATAACATGAGGTTTTCAATCAgataaaatgtacatttattaCTTACAATATACCACCCTGAAACAGAGTTTATGCCTGCTAATGGATGGGATAATGAGTCAGACAGAAACATACCGAACATACTGATCTGTGATCTCAGTCCAACAATTTAGCCTACAATTACTGTGTCCTCATCTGGGAACTCATAGTAGGGCACCTCCAGGTTGAGTGGGGCTGGGCCTTTCCTGATGCGGCCAGAGGCATCGTAGTGAGAGCCATGGCAGGGGCAGTAGTATCCGCCATAGTCACCAGCATTGGCGATGGGTACACAGCCCAGGTGGGTGCACACGCCGATGACAATGATCCATTTTGGGTTGGCGACGCGGTCCTTGTCGTGCTGGGGGTCACGAAGCACAGCCATTTCCACAGCTTCCTCGGTGGCGATCTCTTTCTCAGTCCGGTGGCGGATGAACAGAGGCTTGCCCCTCCACTTGAAGGTCATATTCTTGCCCTCTGGGATCTCTCCCAGCTTGACCTCGATCTTGGACATGGCCAGGACATCAGCTGAGGCACTCATGGAAGAGATAAACTGTGTGGCCACGGTCTTGGCTGTGTAGACACCCACCACGGCTGTGGCCCCGGTGACAAGGTAGGAGAAGGTTTTCCTGGACTCGCTGCTCTCCTGAGAAGATTTATTGGGGTCAAGCAACTCAGGCCGACGGTAATCAGAGAAATCTGGCACCTTGATGTCAGTGTGAGCGAAGCGGACTGCAGCTTTTGCATTTATGCTAACTGATACTGCCGGCCCGGTCTTGGGGCTCTGGCCGTTCAGGGACTCGCGGGTTAGGAACGGTTTCTTCGTGTCTACCAACACTTTCTCTCCTTTTACAACCACCCCTGGAATAAGTGCTTTGAGTGGTCCAGCAACTGCATAGTTCGTTGCCTGCAAGTATGGGGAAAATGCCCCCGAACGAGCGGCAAGGGACATCATCTTTTAAGCGAGGTCCTtgcaatgctagctagctacgacCTTGCCTGGATTGTGC

Function

NR:

description
cytochrome b-c1 complex subunit Rieske, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2297266 True 1579 lncRNA 0.47 2 20192675 20197104
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110506368 shcbp1 coding upstream 246544 19922616 ~ 19946131 (+)
vps35 vps35 coding upstream 284789 19892261 ~ 19907886 (+)
LOC110506364 LOC106562001 coding upstream 303936 19850431 ~ 19888739 (+)
LOC110506362 LOC106587296 coding upstream 345668 19840371 ~ 19847007 (+)
LOC110506360 dnaja2 coding upstream 377422 19810088 ~ 19815253 (+)
LOC110506370 LOC106562009 coding downstream 183258 20380362 ~ 20399831 (+)
LOC118944457 NA coding downstream 257577 20454681 ~ 20457347 (+)
LOC110506373 LOC106562010 coding downstream 282597 20479458 ~ 20482966 (+)
LOC110506375 LOC100194714 coding downstream 289517 20486621 ~ 20489956 (+)
LOC110506376 LOC106562012 coding downstream 296400 20493504 ~ 20498264 (+)
G2008037 NA non-coding upstream 826 20191633 ~ 20191849 (+)
G2008036 NA non-coding upstream 1086 20191380 ~ 20191589 (+)
G2008030 NA non-coding upstream 3347 20189095 ~ 20189328 (+)
G2007563 NA non-coding upstream 186232 20006218 ~ 20006443 (+)
G2007559 NA non-coding upstream 192378 20000095 ~ 20000297 (+)
LOC118944432 NA non-coding downstream 7824 20196320 ~ 20207642 (+)
G2008129 NA non-coding downstream 206055 20403159 ~ 20403663 (+)
G2008130 NA non-coding downstream 207890 20404994 ~ 20405636 (+)
G2008188 NA non-coding downstream 217863 20414967 ~ 20415166 (+)
G2008189 NA non-coding downstream 218104 20415208 ~ 20415413 (+)
G2006213 NA other upstream 1423175 18769133 ~ 18769500 (+)
G2004946 LOC106587126 other upstream 2311882 17870559 ~ 17880793 (+)
fshb LOC100136594 other upstream 3578493 16609650 ~ 16614319 (+)
G2002823 NA other upstream 4118631 16071987 ~ 16074044 (+)
LOC110506284 LOC106561914 other upstream 4392602 15734525 ~ 15800073 (+)
G2008616 NA other downstream 516259 20713363 ~ 20713673 (+)
G2009636 NA other downstream 1415930 21613034 ~ 21613429 (+)
G2009769 NA other downstream 1640619 21837723 ~ 21838158 (+)
G2009770 NA other downstream 1641599 21838703 ~ 21839241 (+)

Expression

G2008038(LOC106562006) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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G2008038(LOC106562006) Expression in each Bioproject

Bar chart with 19 bars.
G2008038(LOC106562006) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034012 uqcrfs1 coding NC_007118.7 CM002891.2 45400716 ~ 45406089 (+)