G2008481


Basic Information

Item Value
gene id G2008481
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 20527090 ~ 20527852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2297733
AGTAGaggagatgaacagagagagactgaataatGGTGCTTTgtagtggaagagagagacaagacagtGCTTATCCAGAGGAGCCGGTAAATATATAATCTCCACAAACAGCCAAGGTCAGAAAAACAGCACCTGTTTCAGGCATGCAGGCGAGGAATGGCATGGCATGGAATGAGACGGAACCGAGAGGAATGCAGCTCCTGGAAGGGGATCAGTGACTTCCTGGTAACCTTGGGGTCTTTGTATTGGAGAGAGAGGGCACTCAGCTACtctcacacatttacacacaaagaGCCAAGGGTCTTGTGCTTGCAGCCCCTCTCAGAAAGAGTTCGGCGATGTTAATGTCGCCAGCGCCTCAAAGCTTTCTGATGTCCCGTGTCTTTTGAGTACACCAGAGAAAGCTGAGAGCGGGCGGGCGAGTTTGAATGCGGTGCCAAAAACAACAAGCAAGAAAGCAGCTGTGTGCAAGAGAGGCGGATCACCCGAGGAAACAAAGATGGCCGACGAAGAAAGGAAAATAGCATATCAAAGTAGGGTCCTACGTAATTTGTCTTTATGTCTTTAAATAAATTAGCTTGGGTGGAGGCCGTGAATAGTGTACACATGACCATTTTTGCCAATGTAACCACGACTTAAATGTTTTCTCATTAATTTCAAGGCCAAAAAATCTGTACAGTCCAAATATTTTCAAATGCAC
>TU2297735
GTGTGTGTTAGTCAAAGCCGTTCACAGCCTCTGTCTCTGGCTCATCCATCCACAGTGTAATCCAGTAGaggagatgaacagagagagactgaataatGGTGCTTTgtagtggaagagagagacaagacagtGCTTATCCAGAGGAGCCGGTAAATATATAATCTCCACAAACAGCCAAGGTCAGAAAAACAGCACCTGTTTCAGGCATGCAGGCGAGGAATGGCATGGCATGGAATGAGACGGAACCGAGAGGAATGCAGCTCCTGGAAGGGGATCAGTGACTTCCTGGTAACCTTGGGGTCTTTGTATTGGAGAGAGAGGGCACTCAGCTACtctcacacatttacacacaaagaGCCAAGGGTCTTGTGCTTGCAGCCCCTCTCAGAAAGAGTTCGGCGATGTTAATGTCGCCAGCGCCTCAAAGCTTTCTGATGTCCCGTGTCTTTTGAGTACACCAGAGAAAGCTGAGAGCGGGCGGGCGAGTTTGAATGCGGTGCCAAAAACAACAAGCAAGAAAGCAGCTGTGTGCAAGAGAGGCGGATCACCCGAGGAAACAAAGATGGCCGACGAAGAAAGGAAAATAGCATATCAAAGTAGGGTCCTACGTAATTTGTCTTTATGTCTTTAAATAAATTAGCTTGGGTGGAGGCCGTGAATAGTGTACACATGACCATTTTTGCCAATGTAACCACGACTTAAATGTTTTCTCATTAATTTCAAGGCCAAAAAATCTGTACAGTCCAAATATTTTCAAATGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2297733 False 700 lncRNA 0.46 1 20527090 20527789
TU2297735 True 763 lncRNA 0.46 1 20527090 20527852

Neighbor

gene id symbol gene type direction distance location
zgc:162297 LOC106562013 coding downstream 33850 20489949 ~ 20493240 (-)
LOC110506374 LOC106562011 coding downstream 40529 20482359 ~ 20486561 (-)
LOC110506369 LOC106562006 coding downstream 329949 20192660 ~ 20197141 (-)
hrh3 LOC106562003 coding downstream 616602 19908378 ~ 19910488 (-)
orc6 orc6 coding downstream 635029 19888694 ~ 19892061 (-)
LOC110506379 LOC106562036 coding upstream 467407 20995259 ~ 21033710 (-)
LOC118944467 NA coding upstream 673660 21201512 ~ 21203697 (-)
si:ch211-186j3.6 LOC106562040 coding upstream 848583 21376435 ~ 21596616 (-)
LOC118944445 NA coding upstream 1156534 21684386 ~ 21686159 (-)
mtss1lb LOC106587150 coding upstream 1163596 21691448 ~ 21759635 (-)
G2008465 NA non-coding downstream 24121 20502727 ~ 20502969 (-)
G2008417 NA non-coding downstream 51220 20475604 ~ 20475870 (-)
G2008409 NA non-coding downstream 64576 20462115 ~ 20462514 (-)
G2008398 NA non-coding downstream 81541 20445307 ~ 20445549 (-)
G2008397 NA non-coding downstream 83993 20442797 ~ 20443097 (-)
G2008482 NA non-coding upstream 110 20527962 ~ 20528172 (-)
G2008490 NA non-coding upstream 22555 20550407 ~ 20550652 (-)
G2008498 NA non-coding upstream 28339 20556191 ~ 20556469 (-)
G2008501 NA non-coding upstream 29933 20557785 ~ 20557991 (-)
G2008515 NA non-coding upstream 44394 20572246 ~ 20572469 (-)
G2005584 NA other downstream 2292554 18234274 ~ 18234536 (-)
G2005456 LOC106561978 other downstream 2327501 18194110 ~ 18199589 (-)
G2005166 NA other downstream 2637009 17887445 ~ 17890081 (-)
G2003819 LOC106561933 other downstream 3803408 16720991 ~ 16723682 (-)
nav2a LOC106587075 other downstream 4567525 15900960 ~ 16211028 (-)
G2009991 NA other upstream 1106427 21634279 ~ 21634592 (-)
lto1 oraov1 other upstream 1875166 22402983 ~ 22405876 (-)
G2011712 LOC106587247 other upstream 2717932 23245784 ~ 23247139 (-)
G2012712 NA other upstream 3678428 24206280 ~ 24222078 (-)
LOC110506455 LOC106562138 other upstream 3968461 24486973 ~ 24599682 (-)

Expression


Co-expression Network