XLOC_000391 (prkx)


Basic Information

Item Value
gene id XLOC_000391
gene name prkx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33217911 ~ 33283689 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000665
GCTTCCTTGCCGCTGTGTGTGATGTTTTGAAGGGGAAATGGGTTCAGATTTCTTGATGGGGACGGAAGAGGgaagtaaataatttaaatgtcactGATATCCGGCAATATACATTAGGGGGACCGTCAACCAACGTTCACACAGTATCCTTGCTCCTGAAAAAAATCGTCTGGATAACCTTCTGAATTCGTAAGGCTGAAGTTTGAGTCCTGTAGCACTCCTGTCTTTGTTACCGTACAGTAGTCGCATAAGGGACGTCCGTAATAAAGTAGCGAATAAATGACAGTCTCATTAACAtgaatcgcttgcttttttaatcaCTTGCTGTTTATCATTTTTACTGTCCTGGTCATTATCTGGTTACCTAGCGATGGTAAGCAGAGGGTCTTCATCTGCTTTGTGCGAACAAAGGACATGTTAACTTGACCAAAACAGATCAATGCTGTTATTATCAATAGCGCGTTTTCCTAAAGCGGAAATTCTGGACTTGTTACCTTGAAGTGCCCTTTGATGTGGCAAGAGTCCGAAAATCATACGGAAGATGGCATCAACTAAAGGAAAAGCTGGAATAAATAATGAAAGCAGTTCTGGTCGGGATAGTGGCAGGACAGAAGCTGGCAGCCCCACGTTACCCGCAGGGGCCGCATCCCTGACCACCAACCGGACCTACACACTAGATGACCTGGATACAATTGCCACCGTTGGTACAGGAACTTTTGGGAGGGTGTTTCTGGTGAAGGATAAAAAGACTAGAGGATTCTTTGCTCTGAAGGCAATGAAGATCCCTGATGTCATTCGTCTAAAGCAGGAGCAGCACGTACATAATGAAAAAGAGGTTTTGACGGAGGTGAACCATCCTTTCCTTGTCAGACTGTTCTGGACGCACCATGATGATCGCTTCCTCTACATGTTGATGGAATATGTGAATGGCGGTGAACTCTTCAGCTATTTACGCAGCCGAGGACATTTCAGTAACAGTACGGGAATGTTTTATTCAGCTGAAATCGTGTGCGCCATTGAATACCTTCACTCCAAAGAAATCGTCTACAGAGACCTGAAGCCAGAGAATATATTGCTGGACAGTGAGGGGCACATTCGACTGACAGATTTCGGGTTTGCTAAAAAGCTCTCCGAAAGGACATGGACTCTGTGCGGCACTCCTGAGTATTTGGCTCCAGAGGTGATTCAGAGTAAAGGTCATGGGCGAGCTGTGGACTGGTGGGCTCTGGGTGTGCTCATCTTTGAAATGCTGGCAGGATATCCACCCTTTTTTGATGATAATCCCTTTGGCATCTACCAGAAGATTCTGGCCGGAAAGCTGGAGTTTCCTCGGCATCTGGATTTATATGTAAAGGATCTAATAAAGAAGTTTCTCGTGACTGACCGGGAAAGAAGGCTTGGAAACATGAAGAATGGAGCCGATGATGTGAAAAAGCACAGATGGTTTAAGTCAGTAAACTGGGAGTCTGTACCCTGTAGAAAGCTGAAGCCACCCATAGTTCCAAAGGTGTCCCACGAGGGAGACACATCCAACTTTGACTCCTATCCAGATGAGGAGTGGAAGAAGGACACACCGGTACCAGCGAAAGATCTGGAAATTTTTAAGAACTTCTAAAAGGAAAGTCATTTTCAATGCCTAAAAAGACAGGACTGTTAAAAGACAAAGGCTCAGAGCTGACATTTAAAGCATTCAGGGGACATTTAATGGTTCTAGTTGcattattatatgcatgttcTTCCTGTCGGTCCCTGAGTTCTGCACACTTGAGAAACCAACAGACTTCTTGTGATCACtattatcataattatcatcATAAAAGAAAATGAGGAAACTGTCTATCACTTCAGCATTATTCAGCACAGCCTGGGTCTCTTTATATTATGCAAATCTAaagtttttaaacatcattttatatTAGTAATATCAAAGGTTCCTTTTGCTGGATCAAGATGAGGTCTTCACTTAGACCTGAACATGTAtggtctttttgttgttgttgttgtgatctAGATAACTTTATAATTGGAAAAGCTTGCTCTATCAGAGCTTTAAGCTTGGGAAATATTATTTTCTGATCATCTGAACTCGCAGTGTTGATGTTTTCATCCTACATGGTATATATATGACACTTGTGCCTGTTTCACACTGCACGCTTGATTAGACGCAACTCTGTGCTTTTTACACTGGCAGCACTACTGTTACTATtattagtgttttatttaataacagcCATGCCTTTTTTTACAATTATcaaagtaaaatatttcagattgagGTGGGACATATTCAAATATCTACAACAGatgcaaaataacaaataaactgcAAGTCTGTAAATCAtctactttaacttttttttattttcataataggTGAATAGTTcattctagggctgcacaatatattgtttcctAATCAATAATGTAACGTGTAAATCTGTTATAtatagttacagtgcatgtccatttacatttataattaagcGCAAAGCACAGTTCATAACACATGTGATTTGTGAAGTTTAACGCTTAAAGAGTAAGATCTGCATTTGGACGTGTTTTGAATTTTTGGAGCACACGTTGTTTGAGTTCACGTTTGTAACTTGTAAAGTATTCATACAAGTGCTATTTTTGATTAATCAATTTATGTGAATACTTTTTCAACagaaaagttttaaaactttaCCTAAAGCATAAAGCTGTATttcgtttttattgttgttgttttgtattgGTCTGCGCTTGTAATTAGTTTATTTTGGTTTATACAGATGCACTCCAATGTGAAATCATCCCAGTCAGAATAAAATTTGAAATTATTTCATAATAGAGTTATTTAcgtcatcttgtgaaattatatataattatatatatcgcaatatacatatttaagagttcccacttagatatgcttagcgttaatagcaggtttggcatgctgggAAAGCACTCTGAGCTCATAATACTTAAGCTTTAAGGCACCCTACTGGTCATTAAGCATttaggggatccgagatcagttAGGTCTCGATATCTCCTcctcagaaaaaaaagagaaaaaggaggagatggggtggaaggtgggattcttccaaaatgaagatgaaGCAGTAGGAAAAAAATGATCCATTTGTTGTAAACTttgatcactctgattggattattactgaaaaCAGATGAACagccagtcgtgctcaatcatatcacatactcctctcaaaattagtttatgaaacttcactcatacattacataacaaaataacatttttgtttgattgtttttgtccccaatatcatgcagccctagatcACTCCAGTTTTGTGTGTAATCTGAGCCCATTTCtgtcacataaaaaaaaagaaaagaaaacagttatggaattttttttttttttttttgtcaggttttaatttatttaattatttttggtcATAATTGAGATAAATCTTAACAATTGGATTGTGACATTCATATAATTTCAGgaatttaataaagtaaatattgGAATATAATTTAATCTATTCTTTTTATAGTCTTTTTATGTGGCACTTTAAGGAATTTCATGGATGTGGGCACCATAATAAATGTGTGCAGTGTGAAACAGGCTAGTACACAcagaatgtttttgtgtgttgtgctttgctgcttttttattgattttctatGTAAACATGGTGTCTTTGACAGCTCTGCTGTGCCtcgtttctttctttttttcttgaacACCTCATTTTTTAAGACACggtcaacatttttaaaaaggtgttTCATGACACTGCCTTATTTTCATTCATCGACTTTACTTCAATTATACCATTGTGGCGTTTTGCATTTAGACCACAAAACCATGTTCTGTGTGAAAAGTCCCAAGATTCCAAAGAGCTTTTCAACACATTCCTGCCAGGAAGTCAGAATAAGAATACCAGGGAAAGTAGAGGTACAGTAGCACTTACCTAATCAAACTTGACCTCACAATCCTGTAGGTAACTCATAAATCAGCATTAACGCTTGTATTATCACATACTCATTGTTGGTCGTGCTTTACACCGTGCTTTATGTGTTCACTAATTGGTTAAGTGCTTAAgacttaaagaaaaaaatgctaGCCAGGTGTTTTCTAAAGTTGCCTTTCGTTGATATGGGGGTGAATTTAGCAAACACAGTTTACATTGCTTTGTACTGCTACTTCTTAATACATGTTTGCCCGATCGAAAGCCTTGCGTAATGGGAAGAGAACTGACTATGGTGTGAAATGCTTTAGAAATGTACTGTAGCTACTGAGTGTATGTTCGAAACAATtcctgtttctttcttctgtttttgtGTTAACTGTGCTGTCTTCTTAAGCAGTGATCTATCATCGTATTGTCTACTGAAAGTCATTTCTTGAAATGGCTATTCTTTTCAAAATTGCGGATGCAAATTTATACTAATGAAAGCGATTTGCAGATTTCATATGGACAGCTGTTACCATCGTGTGGGTTTAGTCTTTTTTTACGttactgtttttgttgttgaaccctgtgtgaaaaaaaaaatgttgtgctgTATTCTTAATTTTACTGTGTtctttttttacaattgtttGAAAGAAaagattgtattttatattgtttacaaCAGCAAAAAAGAGAGTTCTATGAACTTAAAAAAATTGACACAAACCCCAGCATAggattttatacttttatttttttcttattcagTAGTTTCCTTTTATTGCCTTCTGAACATTGATGGTGCATTTGAGATGGTACAAAGTGCAATGTTACCTGCAACTAAGCTGTTACGAAAACTTGAGAAAAGTCTGCAATATTCTATAtccatgaaaataaaacaaacttttcaTGTGGA

Function

symbol description
prkx Predicted to enable cAMP-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be part of cAMP-dependent protein kinase complex. Orthologous to human PRKX (protein kinase X-linked).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005952 cAMP-dependent protein kinase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004691 cAMP-dependent protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-090313-408 Predicted to enable cAMP-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and signal transduction. Predicted to act upstream of or within protein phosphorylation. Predicted to be part of cAMP-dependent protein kinase complex. Orthologous to human PRKX (protein kinase X-linked).

Ensembl:

ensembl_id ENSDARG00000060716

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000665 True 4857 mRNA 0.37 8 33217911 33283689

Neighbor

gene id symbol gene type direction distance location
XLOC_000390 BX322647.1 coding upstream 1193 33215241 ~ 33216718 (+)
XLOC_000389 zgc:174320 coding upstream 424267 32791920 ~ 32793644 (+)
XLOC_000388 CU915272.1 coding upstream 511684 32706109 ~ 32706227 (+)
XLOC_000387 nlgn4xa coding upstream 523961 32521469 ~ 32693950 (+)
XLOC_000386 CU462859.1 coding upstream 703807 32513989 ~ 32514104 (+)
XLOC_000392 mxra5a coding downstream 38485 33322174 ~ 33334732 (+)
XLOC_000393 dhrsx coding downstream 99955 33383644 ~ 33487375 (+)
XLOC_000394 NA coding downstream 234113 33517802 ~ 33518823 (+)
XLOC_000395 chmp2bb coding downstream 274866 33558555 ~ 33569245 (+)
XLOC_000396 htr1fb coding downstream 350497 33634186 ~ 33635304 (+)
XLOC_000383 BX901898.1 non-coding upstream 1199796 32017437 ~ 32018115 (+)
XLOC_000381 NA non-coding upstream 1205533 32011880 ~ 32012378 (+)
XLOC_000400 CU915566.1 non-coding downstream 451329 33735018 ~ 33735134 (+)
XLOC_000401 CT573012.1 non-coding downstream 683468 33967157 ~ 33967273 (+)
XLOC_000403 dre-mir-734 non-coding downstream 839191 34122880 ~ 34122972 (+)
XLOC_000407 CR848003.1 non-coding downstream 1116551 34400240 ~ 34400354 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_02997869_03042673 PRKX coding CI01000049 null 2997591 ~ 3042763 (+)
bowfin (Amia calva) AMCG00010872 si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069 coding CM030133.1 CM030133.1 3034347 ~ 3044090 (-)