G2016574 (LOC106587347)


Basic Information

Item Value
gene id G2016574
gene name LOC106587347
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 27435889 ~ 27438307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2306573
GTTTGCATTtatttccattaaaaaaaaacatttatacgagtaactttaaaatgtttaacagTACCAACATCTGCATGGAATTAAAAACATGAAATTGTTCTTACTTCACTGTCACATCACTAATGTGATTAATTAACATGCCAACACAACTCACTCACACAACCATGATCTAATAAAGATAACATACTATTGAGCTGTGGTCTTTATTGATTTGATGATTTTAATTGTCAGTGAATGGTTAACATAAAGAACAATTCCTGATCAATTATTCATTGTGTGCATCATATGCATTGTGCAAAGGTGGATAAGGGAGAGGACTGGCTGGTTGAGTCCATTTTTGGGTTACTAGTGTCCATGTAACAGCCCCTACTTCATGTTGTAATCATATAGTAGCACGCCTGGGTGCACCAACACCAGGTCAGGGGTGGCAAACTAATTTTGCCCCAGGGGCCACATTCGGTCTTCAATGAGGTTCCAAGGGCTGCAATGAAAATGTGTTGTATTTCCTAGCTGTGGTTATCAgggagctggacacagtcaagaaactgcaggtccattatcattttttcccctccaaaaaaaacattttactcAAACCAACCGTGggctagattttgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgccaGCATGTTTAGACCACACAgctttttttctcctctctgGTTGAGTAGCTGCTGCTGCTTGGTCTGCTTCTCAGAGGCAGGTGTGGACAGGAGCCATGGGCATGCAGTGGGCAGACTCTATGGGCATGCCTgctccctctccatgtctgtaCACCTCAGTGCCAGTCTGTGTGGGCACCAGAGGCACCACTGGCAGAGCTgttggagagagacaggcatcagACTGGCATTACACACACTGAGACTGAAATTGCATGGCTTTTACTACAGGTCCATAACAGTACTCTTTCAGGACATTAAGTTACCGTTGGTGAGCTAATCCCCTAAAAAAAGACACTAAGTAATTATAGGAATATTAATGATGGGAGACAGACATCAACATCCCTCAGGTGAGCTCAGAGCTGTAGGGACTGAGCCTGACGACCAGGGCTGGTGAGAGGGCCCAGGTTCCTGTGAAGTGAGGCTGGGTTAGAGGGCCTGAGACAAGGGGAGCAGTCTGGGCCATGTGCCCCCTGTAGGGTCAGGCTGGCTCTGTGAGGGTGATAAAACACTGGGGACGGTGAGGTCACCGTGTGTTATTCCTCTGTTTTGACAGCGTGGGGGCATTACTCAGGTAGTCTCTTCCTACAGCTACCATGAAACACCATGAGGCTGGTGAGACAGACTATTACTTAGGAGAACCATGCTGCTTGGTGTTGTGAGGAGATCTCAGTGAAGCAAACCTGCTGCCTCTGTCTGGGACACAGGCAGGAAACCAGCGTCTGAGGTTTCATGCACCActaaatacaggtgtgtgtgtgtgtgtgtgtataaaggtgTCATACATGGTGATTATGATGTATTTGTTTGctctacagtagctagctaaatgCAGGGTACTCACAGCTagggacaggtaggatgactgatgTGAAGTTGCTCGGCAACCCGACATGGCCTCCTAGTAGGTCCCGAGACAGGGTGTGATCTTGGGGTTGGGGGAACGTCATTACGTTTGAGTTAGAACCTGAGGAGGACCAGAGAAGGGAATAGCtgtatactactacactactacactgatCCAGTTACCATAACAGCTCAAAGGTTACCCTTATTACGAATACTCTCAAGTCAGTAATGAGAGCTCACCATGAAATAGTATGAAAACAACATAAGTGAAGACACAATGCACAGCGCACAGATTAGATTGTGGGAAATGAAAGTTGACGTATGTTGGGTTGAATTGTTATTGACCTCTGTTGTTGATCTGTAAGGCAACCCAGAGAAAGTCAGTGGTATTCAGTTTGAGGGTTTTTACTGTAGGTATCTCTTCTCTGGAGCGTACCGTGCCCTGTGTGTTGTCCCAGGCTCCCAGTGGCCCCCTCTCCCAGCAGCATCTCCTGCAGCAGGCTGTCCACGCTAGGCTCCCCCAGGAGCCTGGCCAGCTGCAGGGTCTCCACCATCTGCCAGGCCACACTCTGCAGGGGGGGCAGAATCAGCAGCAGCTCTCCAAAACGCCCCCGCTGTTCACAGGTGGCCTCGTCCAGCAGCACCTGGGCCTGGAAACGCAGCTGCCGCACTGTCTGAGGGGCCTCCAGCCCTGGGCAGTctgagagacagggggagagaggtagggttaatactacacacacacagagagagagagagagagtcatcaatctacacacaacatcccataacgacaaag

Function

NR:

description
hepatocyte nuclear factor 4-beta-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2306573 True 2343 lncRNA 0.48 3 27435889 27438307
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118944565 NA coding downstream 86240 27344487 ~ 27349649 (-)
LOC118944564 NA coding downstream 159452 27270448 ~ 27276437 (-)
LOC118944563 NA coding downstream 246510 27188317 ~ 27189379 (-)
LOC110506519 zfhx3 coding downstream 308243 26933838 ~ 27127646 (-)
LOC110506517 LOC106562084 coding downstream 528771 26626173 ~ 26907118 (-)
LOC110506521 LOC106587327 coding upstream 35242 27473549 ~ 27496550 (-)
LOC110506522 LOC106587329 coding upstream 72401 27510708 ~ 27538321 (-)
LOC110506525 LOC106587351 coding upstream 108967 27547274 ~ 27595856 (-)
LOC110506526 LOC106587331 coding upstream 161918 27600225 ~ 27628845 (-)
LOC110506529 atxn1l coding upstream 209639 27647946 ~ 27659588 (-)
G2016580 NA non-coding downstream 56150 27379526 ~ 27379739 (-)
G2016579 NA non-coding downstream 56399 27379215 ~ 27379490 (-)
G2016578 NA non-coding downstream 56678 27378890 ~ 27379211 (-)
G2016273 NA non-coding downstream 64765 27370863 ~ 27371124 (-)
G2016261 NA non-coding downstream 73730 27361857 ~ 27362159 (-)
G2016660 NA non-coding upstream 69822 27508129 ~ 27508570 (-)
G2016662 NA non-coding upstream 70967 27509274 ~ 27509588 (-)
G2016672 NA non-coding upstream 96228 27534535 ~ 27534864 (-)
G2016674 NA non-coding upstream 98521 27536828 ~ 27537120 (-)
G2016675 NA non-coding upstream 98964 27537271 ~ 27537495 (-)
G2016013 NA other downstream 349624 27085930 ~ 27086265 (-)
G2015737 NA other downstream 651228 26778739 ~ 26784661 (-)
G2015718 NA other downstream 700653 26685349 ~ 26735236 (-)
G2015668 NA other downstream 833630 26601779 ~ 26602259 (-)
bola3 bola3 other downstream 1159073 26272579 ~ 26276831 (-)
G2017021 NA other upstream 639590 28077897 ~ 28078556 (-)
polr2m NA other upstream 734536 28171095 ~ 28173731 (-)
G2018044 rsl24d1 other upstream 1270597 28708904 ~ 28712453 (-)
G2018139 cmtr2 other upstream 1476655 28914962 ~ 28917197 (-)
G2018367 NA other upstream 1852328 29290635 ~ 29291601 (-)

Expression

G2016574(LOC106587347) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

G2016574(LOC106587347) Expression in each Bioproject

Bar chart with 15 bars.
G2016574(LOC106587347) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 800.
End of interactive chart.

Co-expression Network