Gene
RNA
| Item | Value |
|---|---|
| gene id | G2018057 |
| gene name | LOC106562238 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 28874080 ~ 28875769 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| THAP domain-containing protein 11-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2308258 | True | 1690 | lncRNA | 0.50 | 1 | 28874080 | 28875769 |
28,872,000
28,872,400
28,872,800
28,873,200
28,873,600
28,874,000
28,874,400
28,874,800
28,875,200
28,875,600
28,876,000
28,876,400
28,876,800
28,877,200
28,877,600
28,878,000
28,878,400
28,878,800
28,879,200
28,879,600
NC_048590.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506572 | LOC106562237 | coding | downstream | 319 | 28862758 ~ 28873761 (-) |
| gfod2 | LOC106562235 | coding | downstream | 25056 | 28839979 ~ 28849024 (-) |
| LOC110506569 | LOC106562236 | coding | downstream | 34889 | 28835976 ~ 28839191 (-) |
| vrk3 | vrk3 | coding | downstream | 49863 | 28816797 ~ 28824217 (-) |
| LOC110506563 | LOC106562234 | coding | downstream | 58721 | 28802882 ~ 28815359 (-) |
| LOC110506105 | LOC106562257 | coding | upstream | 7121 | 28882890 ~ 28888785 (-) |
| si:ch211-122f10.4 | LOC106562245 | coding | upstream | 132579 | 29008348 ~ 29013729 (-) |
| LOC118944416 | LOC106562261 | coding | upstream | 164462 | 29038425 ~ 29045501 (-) |
| LOC110506106 | NA | coding | upstream | 193764 | 29069533 ~ 29073469 (-) |
| LOC110506588 | NA | coding | upstream | 430562 | 29306331 ~ 29322668 (-) |
| G2018118 | NA | non-coding | downstream | 15209 | 28855354 ~ 28858871 (-) |
| G2018119 | NA | non-coding | downstream | 18888 | 28851889 ~ 28855192 (-) |
| G2018061 | NA | non-coding | downstream | 28999 | 28787065 ~ 28845081 (-) |
| G2018059 | NA | non-coding | downstream | 69185 | 28722587 ~ 28804895 (-) |
| G2018084 | NA | non-coding | downstream | 152729 | 28721117 ~ 28721351 (-) |
| G2018128 | NA | non-coding | upstream | 13609 | 28889378 ~ 28889593 (-) |
| G2018134 | NA | non-coding | upstream | 25224 | 28900993 ~ 28901253 (-) |
| G2018140 | cmtr2 | non-coding | upstream | 37714 | 28913483 ~ 28914789 (-) |
| G2018165 | NA | non-coding | upstream | 75084 | 28950853 ~ 28951068 (-) |
| G2018168 | NA | non-coding | upstream | 76434 | 28952203 ~ 28953872 (-) |
| G2018044 | rsl24d1 | other | downstream | 161627 | 28708904 ~ 28712453 (-) |
| polr2m | NA | other | downstream | 700504 | 28171095 ~ 28173731 (-) |
| G2017021 | NA | other | downstream | 795524 | 28077897 ~ 28078556 (-) |
| G2016013 | NA | other | downstream | 1787815 | 27085930 ~ 27086265 (-) |
| G2015737 | NA | other | downstream | 2089419 | 26778739 ~ 26784661 (-) |
| G2018139 | cmtr2 | other | upstream | 39193 | 28914962 ~ 28917197 (-) |
| G2018367 | NA | other | upstream | 414866 | 29290635 ~ 29291601 (-) |
| G2018415 | NA | other | upstream | 510289 | 29386058 ~ 29386388 (-) |
| G2018508 | NA | other | upstream | 654137 | 29529906 ~ 29530613 (-) |
| LOC110506621 | LOC106562298 | other | upstream | 1718030 | 30556981 ~ 30604748 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00020376 | thap11 | coding | CM030127.1 | CM030127.1 | 17452928 ~ 17453764 (+) |
