Gene
RNA
| Item | Value |
|---|---|
| gene id | G2018897 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 30103374 ~ 30104646 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC106511988, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2309172 | True | 1027 | lncRNA | 0.35 | 3 | 30103374 | 30104646 |
30,102,400
30,102,800
30,103,200
30,103,600
30,104,000
30,104,400
30,104,800
30,105,200
30,105,600
30,105,600
30,106,000
30,106,400
30,106,800
30,107,200
30,107,600
30,108,000
30,108,400
30,108,800
NC_048590.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506613 | psf2 | coding | upstream | 99277 | 30001053 ~ 30004097 (+) |
| LOC110506612 | LOC106587369 | coding | upstream | 106866 | 29993772 ~ 29996508 (+) |
| LOC110506610 | LOC107388308 | coding | upstream | 112855 | 29989755 ~ 29990519 (+) |
| LOC110506607 | NA | coding | upstream | 329323 | 29755256 ~ 29774051 (+) |
| LOC110506606 | LOC106562262 | coding | upstream | 355244 | 29736045 ~ 29748130 (+) |
| LOC110506615 | LOC106587442 | coding | downstream | 373909 | 30478555 ~ 30481821 (+) |
| LOC110506620 | cmc2 | coding | downstream | 446863 | 30551509 ~ 30556040 (+) |
| LOC100136122 | LOC100169858 | coding | downstream | 1709995 | 31814641 ~ 31822927 (+) |
| LOC110506638 | LOC106562311 | coding | downstream | 1975269 | 32079915 ~ 32087772 (+) |
| LOC110506639 | LOC106563533 | coding | downstream | 2041534 | 32146180 ~ 32165255 (+) |
| G2018883 | NA | non-coding | upstream | 13868 | 30088344 ~ 30089506 (+) |
| G2018798 | LOC106587370 | non-coding | upstream | 122690 | 29978984 ~ 29980684 (+) |
| G2018821 | NA | non-coding | upstream | 151988 | 29950536 ~ 29951386 (+) |
| G2018816 | NA | non-coding | upstream | 157568 | 29945549 ~ 29945806 (+) |
| G2018810 | NA | non-coding | upstream | 163698 | 29939141 ~ 29939676 (+) |
| G2018933 | NA | non-coding | downstream | 74839 | 30179485 ~ 30179836 (+) |
| G2018934 | NA | non-coding | downstream | 75371 | 30180017 ~ 30180230 (+) |
| G2018935 | NA | non-coding | downstream | 77077 | 30181723 ~ 30181958 (+) |
| G2018941 | NA | non-coding | downstream | 87180 | 30191826 ~ 30192052 (+) |
| G2018944 | NA | non-coding | downstream | 90610 | 30195256 ~ 30195534 (+) |
| G2018721 | NA | other | upstream | 268816 | 29834176 ~ 29834558 (+) |
| LOC110506235 | LOC106587398 | other | upstream | 1055542 | 29038558 ~ 29047832 (+) |
| LOC110506577 | LOC106562242 | other | upstream | 1154298 | 28945317 ~ 28952574 (+) |
| cog4 | cog4 | other | upstream | 1382823 | 28712737 ~ 28725956 (+) |
| G2017100 | cgnl1 | other | upstream | 1848922 | 28251849 ~ 28254452 (+) |
| G2018959 | NA | other | downstream | 113953 | 30218599 ~ 30219119 (+) |
| G2019067 | NA | other | downstream | 293194 | 30397840 ~ 30398218 (+) |
| G2019479 | NA | other | downstream | 412521 | 30517167 ~ 30518593 (+) |
| G2019478 | NA | other | downstream | 419989 | 30524635 ~ 30528408 (+) |
| G2019882 | NA | other | downstream | 788632 | 30893278 ~ 30936313 (+) |
