Gene
RNA
| Item | Value |
|---|---|
| gene id | G2024598 |
| gene name | brd7 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 35819705 ~ 35820334 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| brd7 | Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human BRD7 (bromodomain containing 7). |
| description |
|---|
| bromodomain-containing protein 7-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2315618 | False | 280 | lncRNA | 0.44 | 2 | 35819705 | 35820334 |
| TU2315619 | False | 280 | lncRNA | 0.44 | 2 | 35819705 | 35820334 |
| TU2315620 | True | 283 | lncRNA | 0.43 | 2 | 35819705 | 35820334 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506731 | LOC106587576 | coding | upstream | 6787 | 35736475 ~ 35812918 (+) |
| LOC110506730 | LOC106587575 | coding | upstream | 85928 | 35700790 ~ 35733777 (+) |
| LOC110506727 | LOC106587571 | coding | upstream | 121599 | 35691262 ~ 35698106 (+) |
| LOC110506728 | cnep1r1 | coding | upstream | 128755 | 35688053 ~ 35690950 (+) |
| LOC110506120 | LOC106562381 | coding | upstream | 131927 | 35685065 ~ 35687778 (+) |
| LOC110506733 | LOC106562389 | coding | downstream | 92421 | 35912755 ~ 35950964 (+) |
| LOC110506121 | nod2 | coding | downstream | 173729 | 35994063 ~ 36014868 (+) |
| LOC110506735 | LOC106562387 | coding | downstream | 190992 | 36011326 ~ 36042447 (+) |
| LOC110506122 | NA | coding | downstream | 373145 | 36193479 ~ 36194049 (+) |
| LOC118944405 | LOC107550285 | coding | downstream | 981546 | 36801880 ~ 36815681 (+) |
| G2024553 | LOC106562336 | non-coding | upstream | 136198 | 35681098 ~ 35683507 (+) |
| ss18l2 | s18l2 | non-coding | upstream | 256731 | 35560782 ~ 35562974 (+) |
| G2024471 | NA | non-coding | upstream | 276331 | 35543175 ~ 35543374 (+) |
| G2024470 | NA | non-coding | upstream | 276572 | 35542853 ~ 35543133 (+) |
| G2024657 | NA | non-coding | downstream | 81372 | 35901706 ~ 35902214 (+) |
| G2025280 | NA | non-coding | downstream | 100946 | 35921280 ~ 35921506 (+) |
| G2025281 | NA | non-coding | downstream | 101796 | 35922130 ~ 35922386 (+) |
| G2025283 | NA | non-coding | downstream | 103129 | 35923463 ~ 35923680 (+) |
| G2025286 | NA | non-coding | downstream | 109096 | 35929430 ~ 35929661 (+) |
| G2024473 | LOC106562390 | other | upstream | 270956 | 35547972 ~ 35548749 (+) |
| LOC110506714 | LOC106562344 | other | upstream | 822515 | 34992692 ~ 35036017 (+) |
| tm2d3 | tm2d3 | other | upstream | 923080 | 34891516 ~ 34896626 (+) |
| G2022626 | NA | other | upstream | 1833860 | 33982717 ~ 33985845 (+) |
| G2025422 | NA | other | downstream | 238700 | 36059034 ~ 36059518 (+) |
| G2027338 | LOC106578490 | other | downstream | 2026961 | 37847295 ~ 37847578 (+) |
| G2027611 | NA | other | downstream | 2397892 | 38218226 ~ 38219793 (+) |
| G2027635 | NA | other | downstream | 2412202 | 38232536 ~ 38232938 (+) |
| G2027708 | LOC106562446 | other | downstream | 2603637 | 38423971 ~ 38424603 (+) |
