G2030770 (scg3)


Basic Information

Item Value
gene id G2030770
gene name scg3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41698473 ~ 41706716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2322764
CCCTCGTCTTTGTTGTGTTTCTTCAGCCACTCAATGTTCTTCCTGATGGCTTCCAAGTAGATCTCAGACTTGCCTGGGTGATCTCTGGTCTCAGTGGACGGCGCTTCTTCCTTGGTTGAGTCTTTCAGGTTCTCATACTCCTTCTGCATCTTGGCCGCCTCTGCCTTGGTGTTGTCATCGTCCTCTGGGGTCTTCCCTGTAGGAGGGATGATGCCAGGGATCCCCAGTGTTTTCCCCAGCTTATTCTTGGTCTGCAGAGCGATCATAGCATCCAGGTTCTCAAGGTAGGAGACTCCCTCTTCAGGTGTGATGGTTCCATATTTCACCATCATCTTGACAAAGTCAATCAGAGTCTTCATGATAGTGATCAGAGTCTCTCTCTCCTGGGCGTCTTGCTCTGAGTCTAGACTCTTTAGCAGACGGTAGAAGTTGGGGAAGTACTGAAGGTCCTGAAGACCATCCTCTGGGCTCAACTCgtttccctcatctctctctccttcactcctctcctcctcctccccttctccctcactctctctatcccagGTGTTATCCACTgtgtcatccccctctcctctgtccacgTCGTCATCAATGGCCGCCTgatcttcatcatcatcttcttCATCGTACCGACGGTTGGGGGAACCAGTAACAtcCATGCTAGCGTCGGGATTCTGGTCATCCTGGTCACCCCGGGTCACGGGATAGTCCTCTCCCAGGTCCTCGATCTCATTGTTCTTTGCGTTCTTAGTGATGAGGTCCTGAAGAGCTTCGGCTACCTCGTACTCCAGActgtctgcctggctgtctgTTATCAGGCCCAGTCTGAGCAGCTTGGAGACGATCCTGTCAAATACACCTCTGTCGTCCTCCTCGTATATCTTAGTAGCGATCTTCTGGACGATGTCTTCAGCCGTTAGAGGGGTACCATCCACCTGCCTGAAGCTCTCTGGGTCA

Function

symbol description
scg3 Predicted to be involved in protein localization to secretory granule. Predicted to be located in extracellular region and transport vesicle membrane. Predicted to be active in secretory granule membrane. Is expressed in endocrine system; nervous system; and neural tube. Orthologous to human SCG3 (secretogranin III).

NR:

description
PREDICTED: secretogranin-3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2322764 True 960 lncRNA 0.52 7 41698473 41706716

Neighbor

gene id symbol gene type direction distance location
LOC118944452 LOC106587168 coding downstream 23000 41665197 ~ 41675473 (-)
LOC118944424 LOC106587313 coding downstream 33393 41660302 ~ 41665080 (-)
LOC110515873 LOC106562546 coding downstream 130526 41461857 ~ 41567947 (-)
LOC110506810 LOC106562534 coding downstream 258875 41431262 ~ 41439598 (-)
LOC110519559 LOC106562535 coding downstream 714823 40938030 ~ 40983650 (-)
LOC118944455 lysm2 coding upstream 16559 41723275 ~ 41738093 (-)
LOC110506143 LOC106562454 coding upstream 48305 41755021 ~ 41779868 (-)
LOC110506142 LOC106562525 coding upstream 120832 41827548 ~ 41862932 (-)
LOC110506831 NA coding upstream 185219 41891935 ~ 41895295 (-)
LOC118944570 NA coding upstream 186415 41893131 ~ 41893245 (-)
G2030765 NA non-coding downstream 10780 41687198 ~ 41687693 (-)
G2030764 NA non-coding downstream 17957 41680128 ~ 41680516 (-)
G2030760 NA non-coding downstream 25788 41672264 ~ 41672685 (-)
G2030759 NA non-coding downstream 26522 41671436 ~ 41671951 (-)
G2030752 NA non-coding downstream 39362 41658750 ~ 41659111 (-)
G2030777 NA non-coding upstream 10126 41716842 ~ 41717182 (-)
G2030769 NA non-coding upstream 14099 41720815 ~ 41722285 (-)
G2030778 NA non-coding upstream 17760 41724476 ~ 41726943 (-)
G2030779 NA non-coding upstream 22825 41729541 ~ 41733676 (-)
G2030789 NA non-coding upstream 42752 41749468 ~ 41749705 (-)
G2030291 NA other downstream 486621 41211477 ~ 41211852 (-)
G2030156 NA other downstream 791280 40906623 ~ 40907193 (-)
G2030162 NA other downstream 799452 40898470 ~ 40899021 (-)
G2030157 NA other downstream 809789 40887603 ~ 40888684 (-)
LOC110506841 cart other upstream 440644 42147360 ~ 42148871 (-)
LOC118944568 LOC106562433 other upstream 509723 42214901 ~ 42217502 (-)
G2031225 NA other upstream 636566 42343282 ~ 42346725 (-)
G2031259 NA other upstream 661538 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 752541 42459257 ~ 42461315 (-)

Expression


Co-expression Network