G2030769


Basic Information

Item Value
gene id G2030769
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41720815 ~ 41722285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2322762
gtatacatgttgaaTATACTCAGACATATTGAAgctggggacagatctaggatcagcttgtcCTCCCACAATCCTAACCTttaccattagtggggaaaatgtaCACCTGATCCACGATCAGCATCTAGAGGCAACTTCCCACTACTACCCATTTTGCAGAAATCAGATAGAGGGAAATGACACAAACAGGGCCCCCTGGAGGGCCCCAAAGGAGTTACCCCAGAacaaagaggagaggatggacatACAGGGCTGAAATgatactggacaacacagctgtTTTTGGTTGAGTTAAAAGCCTTAATACAATAGATCTTACATTGATGCTGGATTGAAAAAATAAGAATTAGAATATGATAGGACAGATTACATAGAATGAATACATTTAGATATATGTGTACTTGTTGCAAAAGTCTATTGCAAAGACATACATATTACCTGCAATTGATGAGAAAGCTAAAGTTGGAACTCTACTATCAGACCTATCTctgtgccaaatggcaccctacttcctatatagtgcactatttttaaccagagccctatggggccttGTCAAAAataatgcactaaatagggaatagtatgccatttgggacacaacctttcCACTAGGCAAagacatcaattcaacgtctattccaaattggttcaacgtaatgacgtggaaacaacgttgagtcaaccagtgtgtgtccATTGGGATGGTTGAACACTCATTCCCCCTCAGTAGGTCAACATTTCACTCCTCAAGGTAGTCAAAGCTGTCATCTAGTaagtagatcagtcagtcaattGATTTGACAGAATAACTATTGAATTTCCCAATCGAGTCAGTGCCATTCAGTGACATCGGACTATTGCTGATTGTTTTCTAGCAGTATAGTTGAATATATACTTTCAGtgatattattaccattattgcATTCCAGCTTTCTGGAAATGTCAAATACAATATGTTTTTGCCtaaattgtttatttttaatacataaaGGTCATACCTTTCCTCTCATAGAGGCCGAATCCTAACCTGAGATCCACTCACTTTACTCAAACTTTCACACCAAACTCCCACTGACATCAAGGTAAGAATTCACACCAAAATCAGTCAGTTACTTTCAGGGATCATCATGTCAAGTTTGGATTCTGCTCATTGTGAGTGAGTCGTAAAGCCAGGAGTTTTTCCAAACCATGTTTCCAGAACAGGAACAACTCTAGGCCCTATTTATAGGTTTATCAATCGTCATACATTTCCAGTGGGTTTTTTGAAGGTTGGTCGTAGGTGTTTGAAGGTTGGTTGTTGGTTATTTTAAGGTTGGTTGAAGGTTACAGGCTGCCGTAGATCCTCTTGATGGTCTCTCCCTCACCCTTCTCAATGATGCCCTTGTCAATGTAGGAGTCCACTTGTTGGTCCATGAAGTCCCTCAATTTGGACA

Function

NR:

description
PREDICTED: secretogranin-3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2322762 True 1436 lncRNA 0.40 2 41720815 41722285

Neighbor

gene id symbol gene type direction distance location
LOC118944452 LOC106587168 coding downstream 45342 41665197 ~ 41675473 (-)
LOC118944424 LOC106587313 coding downstream 55735 41660302 ~ 41665080 (-)
LOC110515873 LOC106562546 coding downstream 152868 41461857 ~ 41567947 (-)
LOC110506810 LOC106562534 coding downstream 281217 41431262 ~ 41439598 (-)
LOC110519559 LOC106562535 coding downstream 737165 40938030 ~ 40983650 (-)
LOC118944455 lysm2 coding upstream 990 41723275 ~ 41738093 (-)
LOC110506143 LOC106562454 coding upstream 32736 41755021 ~ 41779868 (-)
LOC110506142 LOC106562525 coding upstream 105263 41827548 ~ 41862932 (-)
LOC110506831 NA coding upstream 169650 41891935 ~ 41895295 (-)
LOC118944570 NA coding upstream 170846 41893131 ~ 41893245 (-)
G2030777 NA non-coding downstream 3633 41716842 ~ 41717182 (-)
G2030770 scg3 non-coding downstream 14099 41698473 ~ 41706716 (-)
G2030771 NA non-coding downstream 16668 41702546 ~ 41704147 (-)
G2030765 NA non-coding downstream 33122 41687198 ~ 41687693 (-)
G2030764 NA non-coding downstream 40299 41680128 ~ 41680516 (-)
G2030778 NA non-coding upstream 2191 41724476 ~ 41726943 (-)
G2030779 NA non-coding upstream 7256 41729541 ~ 41733676 (-)
G2030789 NA non-coding upstream 27183 41749468 ~ 41749705 (-)
G2030790 NA non-coding upstream 27566 41749851 ~ 41750054 (-)
G2030792 NA non-coding upstream 28750 41751035 ~ 41751736 (-)
G2030291 NA other downstream 508963 41211477 ~ 41211852 (-)
G2030156 NA other downstream 813622 40906623 ~ 40907193 (-)
G2030162 NA other downstream 821794 40898470 ~ 40899021 (-)
G2030157 NA other downstream 832131 40887603 ~ 40888684 (-)
LOC110506841 cart other upstream 425075 42147360 ~ 42148871 (-)
LOC118944568 LOC106562433 other upstream 494154 42214901 ~ 42217502 (-)
G2031225 NA other upstream 620997 42343282 ~ 42346725 (-)
G2031259 NA other upstream 645969 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 736972 42459257 ~ 42461315 (-)

Expression


Co-expression Network