Gene
RNA
| Item | Value |
|---|---|
| gene id | G2030926 |
| gene name | tubgcp4 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 42133071 ~ 42134965 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tubgcp4 | Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Acts upstream of or within retinal cone cell differentiation and retinal rod cell differentiation. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Human ortholog(s) of this gene implicated in microcephaly and chorioretinopathy 3. Orthologous to human TUBGCP4 (tubulin gamma complex associated protein 4). |
| description |
|---|
| PREDICTED: gamma-tubulin complex component 4 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2322965 | True | 1554 | lncRNA | 0.46 | 2 | 42133071 | 42134965 |
42,131,600
42,132,000
42,132,400
42,132,800
42,133,200
42,133,600
42,134,000
42,134,400
42,134,800
42,135,200
42,135,600
42,136,000
42,136,400
42,136,800
42,137,200
42,137,600
42,138,000
42,138,400
42,138,800
42,139,200
NC_048590.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| trnap-ugg-69 | NA | coding | upstream | 6252 | 42126746 ~ 42126819 (+) |
| LOC100136262 | LOC106562517 | coding | upstream | 14640 | 42053349 ~ 42118431 (+) |
| LOC110513173 | LOC106562522 | coding | upstream | 156006 | 41926763 ~ 41977068 (+) |
| LOC118944487 | NA | coding | upstream | 229673 | 41901194 ~ 41903398 (+) |
| LOC110506144 | LOC105015051 | coding | upstream | 309061 | 41806137 ~ 41824010 (+) |
| LOC118936602 | LOC106587807 | coding | downstream | 3177 | 42138142 ~ 42143452 (+) |
| LOC110514283 | LOC106562619 | coding | downstream | 87627 | 42222592 ~ 42289696 (+) |
| crtc3 | crtc3 | coding | downstream | 158590 | 42293555 ~ 42376509 (+) |
| LOC110506161 | LOC106562727 | coding | downstream | 262741 | 42397706 ~ 42461764 (+) |
| trnaa-ugc-184 | NA | coding | downstream | 280178 | 42415143 ~ 42415219 (+) |
| G2030919 | NA | non-coding | upstream | 9357 | 42122515 ~ 42123714 (+) |
| G2030915 | NA | non-coding | upstream | 37207 | 42094690 ~ 42095864 (+) |
| G2030896 | NA | non-coding | upstream | 91053 | 42040384 ~ 42042018 (+) |
| G2030882 | NA | non-coding | upstream | 143639 | 41986196 ~ 41989432 (+) |
| G2030881 | NA | non-coding | upstream | 151718 | 41981099 ~ 41981353 (+) |
| G2031121 | NA | non-coding | downstream | 252642 | 42387607 ~ 42387812 (+) |
| G2031131 | NA | non-coding | downstream | 265143 | 42400108 ~ 42400394 (+) |
| G2031135 | NA | non-coding | downstream | 273501 | 42408466 ~ 42408777 (+) |
| G2031138 | NA | non-coding | downstream | 280453 | 42415418 ~ 42416015 (+) |
| LOC110526920 | scg3 | other | upstream | 410690 | 41688562 ~ 41722381 (+) |
| LOC110512697 | LOC106562529 | other | upstream | 490087 | 41600933 ~ 41643474 (+) |
| G2029990 | NA | other | upstream | 1219593 | 40912935 ~ 40913478 (+) |
| G2029691 | NA | other | upstream | 1590807 | 40541556 ~ 40542264 (+) |
| LOC110506777 | LOC106592882 | other | upstream | 2317740 | 39809065 ~ 39815331 (+) |
| G2031110 | NA | other | downstream | 184345 | 42319310 ~ 42320401 (+) |
| G2031381 | LOC106562638 | other | downstream | 516794 | 42651759 ~ 42654496 (+) |
| spg21 | spg21 | other | downstream | 543248 | 42674297 ~ 42681389 (+) |
| G2031390 | NA | other | downstream | 550673 | 42685638 ~ 42687128 (+) |
| G2032117 | NA | other | downstream | 1404025 | 43538990 ~ 43539362 (+) |
