G2031381 (LOC106562638)


Basic Information

Item Value
gene id G2031381
gene name LOC106562638
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 42651759 ~ 42654496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2323556
cgcCCGCGAGCTGTGtggatgcaataattgaataacatgtatgtttacatttattttgcaacactcaCGCACGTGACGTGAGCGGAGTGGTCAGCATGTTACTTATACACTTTAATACTGTATTGTCCCCAACCGAGTTGAGTCTCAGGTAATTATGAATACTTACTTTACATACACAGGCACTGATTTCCCTTGGACCACGTCTTCGTTCAGCTCAACAGCCATGATGTCTGAGTGTGGCACTTCAAACATGGGTTCAAGAAGCAATTTTTCCATAATGGACCTTAGCCCACGAGCACCGGTCTTCCTTTCCAAAGCCAACCTGGCGATGGCTCTCAAGGCATCTGGAGTTACATTCAGTTCACACTTGTCCATGCTGAACAGGGCCTGGTACTGTGGTATGACAGCATTGCGTGGCTCCGTCAGGATCCTAACCAGGGTCTCCTCATCCAGGCTGTGCAGGGGAACCACCACAGGCAGGCGCCCCACAAACTCGGGGATCATCCCAAACTCGATGAGGTCCCGGGCCTCCACGTGCTTCAAGAGTCGGTCCTTCTCCTTGATCTCCAGCACGGCGTCCATCTCCGCTCCGCTGCTGTTGGCCAGGTCTGCGGCCGCAGCCGCCCGACGCCCCTGTCCCATATTGGACGGCGTTCCGAAGCCC

Function

NR:

description
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2323556 True 664 TUCP 0.53 3 42651759 42654496
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110513925 LOC106562633 coding upstream 24728 42624304 ~ 42627031 (+)
si:cabz01068815.1 LOC106587700 coding upstream 34186 42609361 ~ 42617573 (+)
LOC118936412 LOC106562630 coding upstream 46360 42591623 ~ 42605399 (+)
LOC110526666 prc1 coding upstream 64961 42576377 ~ 42586798 (+)
LOC110526664 LOC106562628 coding upstream 75581 42565631 ~ 42576178 (+)
spg21 spg21 coding downstream 19801 42674297 ~ 42681389 (+)
LOC118944566 LOC106587688 coding downstream 76100 42726882 ~ 42748573 (+)
LOC110511523 pcsk6 coding downstream 147374 42801870 ~ 42886938 (+)
LOC110526703 tm6sf1 coding downstream 267391 42921887 ~ 42930481 (+)
LOC110515300 LOC106583399 coding downstream 430136 43084632 ~ 43160907 (+)
G2031379 NA non-coding upstream 2130 42647769 ~ 42649629 (+)
G2031358 NA non-coding upstream 61368 42590021 ~ 42590391 (+)
G2031198 NA non-coding upstream 63102 42588359 ~ 42588657 (+)
G2031197 NA non-coding upstream 63912 42586831 ~ 42587847 (+)
G2031405 NA non-coding downstream 49345 42703841 ~ 42708770 (+)
G2031417 NA non-coding downstream 70446 42724942 ~ 42737368 (+)
G2031477 NA non-coding downstream 224239 42878735 ~ 42880384 (+)
G2031110 NA other upstream 331358 42319310 ~ 42320401 (+)
LOC110526920 scg3 other upstream 929378 41688562 ~ 41722381 (+)
LOC110512697 LOC106562529 other upstream 1008775 41600933 ~ 41643474 (+)
G2029990 NA other upstream 1738281 40912935 ~ 40913478 (+)
G2029691 NA other upstream 2109495 40541556 ~ 40542264 (+)
G2031390 NA other downstream 31142 42685638 ~ 42687128 (+)
G2032117 NA other downstream 884494 43538990 ~ 43539362 (+)
LOC110506879 LOC106587845 other downstream 1122091 43774037 ~ 43777549 (+)
G2033013 NA other downstream 1975979 44630475 ~ 44630763 (+)

Expression

G2031381(LOC106562638) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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G2031381(LOC106562638) Expression in each Bioproject

Bar chart with 17 bars.
G2031381(LOC106562638) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network