G2037433



Basic Information


Item Value
gene id G2037433
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50022718 ~ 50107655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU2330797
cgctctcctctcctccatcaaacacattccacAGAGAACCCTTaacgttctcctctcctccatcaaacacattccacAGAGAACCCTTaacgttctcctctcctccatcaaacacattccacAGAGAACCCTTAACGTTCTCCTTTGATTCTATGCTTCTTCTCCATCATTTATTTAATgtctcaatgttcaaaatgtcGAATCCAACACCAATatacatatggaattgtttggTCTTTTTCAGGGAGACAGATGTAGTTAATACTCTTAATGCAGAAACAGAATGATCCAGAAAATGGGACTGGAAAGAGAGGAAAAATAAGAGAAAGAAGTGCTGTATTTTTCACCCATATGGACTGGTtggtgttattttattgtttgttTTACAGTATCGTTGGTACTTTTGTTCTTAGGTTGACAAGATAAGAGGGAAAAGTCCAATTAAAGGTGTAGCTTTCTCAGAGTGGAATCAAGACGACAGGGGCAGGCATCAACAGAGCTTTGGTGCTGGcagctactgtatgtatgtacgttaGCTGAATATCAGGTTCAGGCAACATTTTATCAGGCAACCTATGCACCTATGCTAAATGCTCTTGAGTCTTGTCCAGACATGGCGGAACACTGTTAAACATCAGTGCTTCATACATTCACTTTAAATGTTTTCTGTCTCAGTTTGGCTTTTTCCTCTTTTTATTTTTCTATGAATACCAGTTGAAATGTACATGTAGACCCTCTTCTTCTGTCTATTTTCTATCCTGGATTTTCATTCAATGCACATATGTGTCCAAGAACGTGTTGGAACATTCTTCCTCATTGTTGTGTAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTTGACTGTGTGAATGTGGGATTCTAGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTAATGTTGACTGTGAATGTGTGGTTCTAGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTAATGTTGACTGTGAATGTGTGATTCTAGAATCTGTCTGATGTTGAATGTGTGTGAGTGAACTAAAGAAAGTATGAATTTAATttgtctaaaatgtaaaaaatgtaattttctctgtcagacaaATGGACTAAAAGTGTGGTAAAGTGTTTTACTACTTCTTGTGTACATATAATTATGGAAACCAATAAATGTTGAAATGAAAAA
>TU2330799
cgctctcctctcctccatcaaacacattccacAGAGAACCCTTaacgttctcctctcctccatcaaacacattccacAGAGAACCCTTaacgttctcctctcctccatcaaacacattccacAGAGAACCCTTAACGTTCTCCTTTGATTCTATGCTTCTTCTCCATCATTTATTTAATgtctcaatgttcaaaatgtcGAATCCAACACCAATatacatatggaattgtttggTCTTTTTCAGGGAGACAGATGTAGTTAATACTCTTAATGCAGAAACAGAATGATCCAGAAAATGGGACTGGAAAGAGAGGAAAAATAAGAGAAAGAAGTGCTGTATTTTTCACCCATATGGACTGGTtggtgttattttattgtttgttTTACAGTATCGTTGGTACTTTTGTTCTTAGGTTGACAAGATAAGAGGGAAAAGTCCAATTAAAGGTGTAGCTTTCTCAGAGTGGAATCAAGACGACAGGGGCAGGCATCAACAGAGCTTTGGTGCTGGcagctactgtatgtatgtacgttaGCTGAATATCAGGTTCAGGCAACATTTTATCAGGCAACCTATGCACCTATGCTAAATGCTCTTGAGTCTTGTCCAGACATGGCGGAACACTGTTAAACATCAGTGCTTCATACATTCACTTTAAATGTTTTCTGTCTCAGTTTGGCTTTTTCCTCTTTTTATTTTTCTATGAATACCAGTTGAAATGTACATGTAGACCCTCTTCTTCTGTCTATTTTCTATCCTGGATTTTCATTCAATGCACATATGTGTCCAAGAACGTGTTGGAACATTCTTCCTCATTGTTGTGTAATCTGTCTGATGTtgactgtgtgaatgtgtgattCTTGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTtgactgtgtgaatgtgtgattCTTGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTTGACTTTGTGAATGTGGGATTCTTGAATCTGTCTGATGTtgactgtgtgaatgtgtgggattCTAGAATCTGTCTGATGTtgactgtgtgaatgTGTGGGATTCTAGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTAATGTTGACTGTGAATGTGTGGTTCTAGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTAATGTTGACTGTGAATGTGTGATTCTAGAATCTGTCTGATTTTGACTGT
>TU2330800
cgctctcctctcctccatcaaacacattccacAGAGAACCCTTaacgttctcctctcctccatcaaacacattccacAGAGAACCCTTaacgttctcctctcctccatcaaacacattccacAGAGAACCCTTAACGTTCTCCTTTGATTCTATGCTTCTTCTCCATCATTTATTTAATgtctcaatgttcaaaatgtcGAATCCAACACCAATatacatatggaattgtttggTCTTTTTCAGGGAGACAGATGTAGTTAATACTCTTAATGCAGAAACAGAATGATCCAGAAAATGGGACTGGAAAGAGAGGAAAAATAAGAGAAAGAAGTGCTGTATTTTTCACCCATATGGACTGGTtggtgttattttattgtttgttTTACAGTATCGTTGGTACTTTTGTTCTTAGGTTGACAAGATAAGAGGGAAAAGTCCAATTAAAGGTGTAGCTTTCTCAGAGTGGAATCAAGACGACAGGGGCAGGCATCAACAGAGCTTTGGTGCTGGcagctactgtatgtatgtacgttaGCTGAATATCAGGTTCAGGCAACATTTTATCAGGCAACCTATGCACCTATGCTAAATGCTCTTGAGTCTTGTCCAGACATGGCGGAACACTGTTAAACATCAGTGCTTCATACATTCACTTTAAATGTTTTCTGTCTCAGTTTGGCTTTTTCCTCTTTTTATTTTTCTATGAATACCAGTTGAAATGTACATGTAGACCCTCTTCTTCTGTCTATTTTCTATCCTGGATTTTCATTCAATGCACATATGTGTCCAAGAACGTGTTGGAACATTCTTCCTCATTGTTGTGTAATCTGTCTGATGTtgactgtgtgaatgtgtgattCTTGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTtgactgtgtgaatgtgtgattCTTGAATCTGTCTGATGTtgactgtgtgaatgtgtggttcTAGAATCTGTCTGATGTTGACTGTGAATGTGTGATTCTAGAATCTGTCTGATGTTGAATGTGTGTGAGTGAACTAAAGAAAGTATGAATTTAATttgtctaaaatgtaaaaaatgtaattttctctgtcagacaaATGGACTAAAAGTGTGGTAAAGTGTTTTACTACTTCTTGTGTACATATAATTATGGAAACCAATAAATGTTGAAATGAAAAA

Function


GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
TU2330797 False 1271 lncRNA 0.38 2 50022718 50024263
TU2330799 False 1314 lncRNA 0.39 3 50022718 50107655
TU2330800 True 1195 lncRNA 0.37 2 50022718 50024263

Neighbor


gene id symbol gene type direction distance location
LOC118944446 LOC106587903 coding upstream 2173 50008794 ~ 50020545 (+)
LOC110514611 LOC106593737 coding upstream 36265 49969549 ~ 49986453 (+)
LOC110517837 LOC106562510 coding upstream 57211 49949158 ~ 49965507 (+)
LOC118944431 NA coding upstream 71487 49948796 ~ 49951231 (+)
LOC118944495 LOC106562569 coding upstream 82120 49938071 ~ 49940598 (+)
LOC110506980 LOC106593359 coding downstream 2291 50109946 ~ 50151723 (+)
LOC110506984 LOC106562578 coding downstream 236326 50343981 ~ 50349532 (+)
LOC110506216 traf6 coding downstream 252856 50360511 ~ 50373096 (+)
LOC110506995 LOC106562863 coding downstream 332912 50440567 ~ 50446781 (+)
LOC110506997 LOC106562470 coding downstream 355970 50463625 ~ 50464821 (+)
G2037429 NA non-coding upstream 31696 49988984 ~ 49991022 (+)
G2037397 NA non-coding upstream 99460 49922820 ~ 49923258 (+)
G2037375 NA non-coding upstream 101740 49885890 ~ 49920978 (+)
G2037374 NA non-coding upstream 137525 49884941 ~ 49885193 (+)
G2037511 NA non-coding downstream 53836 50161491 ~ 50162384 (+)
G2037524 NA non-coding downstream 81941 50189596 ~ 50190346 (+)
G2037543 NA non-coding downstream 117187 50224842 ~ 50272897 (+)
G2037546 NA non-coding downstream 119800 50227455 ~ 50228130 (+)
G2037542 NA non-coding downstream 161392 50269047 ~ 50270523 (+)
G2037387 NA other upstream 112202 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 619706 49401400 ~ 49403012 (+)
G2036906 NA other upstream 666174 49356195 ~ 49356544 (+)
G2036631 NA other upstream 726357 49295152 ~ 49296361 (+)
G2036456 NA other upstream 1181005 48840981 ~ 48841713 (+)
G2037833 NA other downstream 213267 50320922 ~ 50323439 (+)
G2037834 LOC106562711 other downstream 220665 50328320 ~ 50329070 (+)
LOC110527008 pex16 other downstream 689643 50744617 ~ 50803181 (+)
G2038302 NA other downstream 893096 51000751 ~ 51003835 (+)

Expression



Co-expression Network