G2037837 (ttc17)


Basic Information

Item Value
gene id G2037837
gene name ttc17
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 50332275 ~ 50332572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2331272
GAGATGTTTCAATCCTTCTGGATTGTAATGTGATTTGTGCATTTAAATAAAGTAGTTAAAAGTGTGTGTACCTCAGAGGCGTTGAGTGCCAGGGCGTCCTCCAGCAGAGTGTGTGCGTGGGCGCTGAGGCCGTGGCGCAGAAGCAGATTGGCAGCGTTGACGAGGGGCAGGTGGCGCTGGGTGGGCGGAGCCGAGGCCAGGGAGTGGCGCAGACACTGCAGCGAGCTGGTACCGTTACCCTTCGCCCGCCAGAACAACGCCGCCTCGTTCTGGAGCAACCAGCCAGGGGCGCtagcct

Function

symbol description
ttc17 Involved in actin filament polymerization and cilium organization. Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in actin cytoskeleton; cytoplasm; and plasma membrane. Is expressed in female organism. Orthologous to human TTC17 (tetratricopeptide repeat domain 17).

NR:

description
tetratricopeptide repeat protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2331272 True 298 lncRNA 0.59 1 50332275 50332572

Neighbor

gene id symbol gene type direction distance location
LOC110506980 LOC106593359 coding upstream 180552 50109946 ~ 50151723 (+)
LOC110526794 apip coding upstream 283688 50041108 ~ 50048587 (+)
LOC118944446 LOC106587903 coding upstream 311730 50008794 ~ 50020545 (+)
LOC110514611 LOC106593737 coding upstream 345822 49969549 ~ 49986453 (+)
LOC110517837 LOC106562510 coding upstream 366768 49949158 ~ 49965507 (+)
LOC110506984 LOC106562578 coding downstream 11409 50343981 ~ 50349532 (+)
LOC110506216 traf6 coding downstream 27939 50360511 ~ 50373096 (+)
LOC110506995 LOC106562863 coding downstream 107995 50440567 ~ 50446781 (+)
LOC110506997 LOC106562470 coding downstream 131053 50463625 ~ 50464821 (+)
LOC118944475 NA coding downstream 211508 50544080 ~ 50599404 (+)
G2037836 NA non-coding upstream 473 50331187 ~ 50331802 (+)
G2037835 NA non-coding upstream 2451 50329596 ~ 50329824 (+)
G2037833 NA non-coding upstream 8836 50320922 ~ 50323439 (+)
G2037829 NA non-coding upstream 16343 50315590 ~ 50315932 (+)
G2037805 NA non-coding upstream 55042 50276806 ~ 50277233 (+)
G2037838 NA non-coding downstream 422 50332994 ~ 50333231 (+)
G2037839 NA non-coding downstream 1298 50333870 ~ 50334181 (+)
G2037855 NA non-coding downstream 47153 50379725 ~ 50380446 (+)
G2037867 NA non-coding downstream 60863 50393435 ~ 50393884 (+)
G2037834 LOC106562711 other upstream 3205 50328320 ~ 50329070 (+)
G2037387 NA other upstream 421759 49909056 ~ 49910516 (+)
G2036925 LOC106563534 other upstream 929263 49401400 ~ 49403012 (+)
G2036906 NA other upstream 975731 49356195 ~ 49356544 (+)
LOC110527008 pex16 other downstream 464726 50744617 ~ 50803181 (+)
G2038302 NA other downstream 668179 51000751 ~ 51003835 (+)
G2038305 NA other downstream 673060 51005632 ~ 51006168 (+)

Expression


Co-expression Network