LOC110507304


Basic Information

Item Value
gene id LOC110507304
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1021095 ~ 1042506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471104.2
TGTAGGCTATTTCTTCTTATTTTTAAAACACATGTATTCAAGAGGGCTGCTGCATTGCTTTTACAGTTACAAAGATATCCAACTGAAATGACGGACTTTCTCACTTTTCCCGCACTGCTCTGGAGTGTCCTGTTGCTAGTGCTCAGCGGCATCATCACACCCGCATGCACAGATGATggtcACCCAGGCCCAAGGTGTGTTCCTGGTATACCGGTCTAGATGGCTGTAACGGGACCAGAGGGGACTCTGGTTTCCCTGGAATCCATGGTCTGGATGGGCCTGATGGGGGAGCgGGTTTCTCAGGGATCAAAGGAGTACCAGGGGACGACACCGTTCAGTTCATCCAGTACCCTGGTATACCTGTAGGGTGATGTCGGCCGTGCTGGGGTTACTGGACTGCCTGTGAGTAAGATGGTTGTTGGACGGTTGTTGGATGGGTTCCCTACAGCCTGTCATTTCACAACATACACTACTTCAAAATGGCCCCCTTACCAGCATGTGCCTACCTCAGCTGCTGTGACATATTCAATGTGTCAACATAGTTACTACTGCCTTACTATTTCCTGGTCACCAGATCTGTATGCGATTTAGCCATCTTCACTAACTGTCCTTGTCATGCCAACAATGTACGTAAGAAGAGCAGCCAGGTTTACATATAACCAGTGCTTAAAGGATCCgcctctttttttaaatgtaaatagtTCTTTCAGTATTGCCACAATATTCCCATACATCTTATTACCTGTCCTGTCTGGCAGTAGCAGGCTGTGTAGtaaaattaaatgtatttggccgcATTACACAAAACATTTTTGGCAACATTTTGTCCTGATCAATGCCGTTTGCAATAACAAAATATTCAAACCGTTCTGTATGAGCGCCATTGCTCAACACTTTCATCAAACTGTCCAATATTTCTAACAATTCCAGACATTTTTTGTTTCTCATTTGGCTCCTGTTTGTTACTCAACTCATACTTGTCCATGGCAATGTTCTGTTCAGCCGTAATAATATTTTCTTCAGTCAAGTGATCTTCATTCACTTCACTCACTGATGTTTTATCCTGAAATGCACTGATTTAGCAGCTTTTAATTCAAAAGTTTTTCTTCAAACTTGTCCTTTCCTTTACTCACTGACGTCCGTCTCAAATCCCTTTCTGCCATCCATGACGATGCTAATTCTATTAGCTAGCTCGACTATGCGCTTGCCTCTACCAGCAATACACTGCTAGCAATTAGACTGTCCCAcgaaaaatatttgtttttatacCCCTTTtttatggtatccaattggtaggaAACACCATACTGAGTCAGAGTCTGGACTCAAACCAGACTCTCTAGTGGCATAGCTAGCActgcgatacagtgccttagaccactgcgccaataAGGATCCCGGAAAATAGCAGTTTTAAACTTGTAAAAAAATGCCTTTTTCCAAACAGAAAAGTTCACGTAGGTTCAGACTTACTCGTCGCCAATCTGTTATTATGTCTCGTGGGTTTCATAACCACGTCTTTATAACAATTCAATAATGATCAGACGGGAGACAGGAATCAGTTAAACCATTTATCTACAATGTGCTCGGTCTCAACACATACAACCCCCATGATGCGCTGCGGCACAAACCCAATGAACAACACTGGCAGAAAAATGTCTTGTTATAAGAACAATGTGTGTTATAAGGAGGCAACTATTTATGCATTACTCAGTTTACTAAATAATTGCCTCCTTATAACAGAAATGAAATCATTGCCAGATTATTGTGAAGTTTACAGTAGTTTCTGCACAGATATTTGCTATTTTGTCATGGACCAGGCTATACATTGATGTTACTAACCTCTTTAGTCAGAAACTCTTAGGTGCATCCAAATGGTTTGATATGGTAGCACCTACACAGAGCTCTGttccagacagacatacagacagagagagagctcaggTCTTGGTCAGTCCCACATCCCACAGGCCACAGCCCCTGTTGTTTTAGTCTTCCTATTCAGCCCTTTgtgctgctactctgttgtttCAGAGTGCCCCCCTATTCAGACCAAAGCCCCCAGAGCTCCACCATTGTCGCTCCCCGGGGGCTTTAGATGGGCAGCTCGTATCCCGACCCGTTTGTCTTCCGAGTGGTTTCACACCACGAGCAAAATGAGAGAGAGCCACAGGCATGCTGAGCCGCCAGGAAGTCACCCATCGGTGGGGGATGGTGGAGTGAAGCGGGGGGAAAACGGGCGGTCAGAGGGTGCTGTTCCCGGCACTGCAGACAATCCGTTGCATGGGGACCCCCACCAACCCCTTCACCCCCTACATTAGTCCTCAGGGATTATGGTGGTATTGGCTTAAATCCCGGTCACACACACAAGAGAGGTGCTCAGGAACTCTGGGACAAAACTGTTGTGGTATGTGGCCTCTTCTCAGCTCATTCTCGTTTCTGCTTAGTTGGGTACTCCTTAAGCATGCATGAGGCCTAACACAGGTAGCATAGCGGTTAGAGAAGGAGGGTTGCTGGTTTAAATCTGATGATGTGTGACCTGGCAACTGGAGAGTTGCTTGCATCATCCTAGACACCTTTGCTTGCTGTTGTTTCCttgtgcaaggcacttaaccccctaCAATTGCTCTGGTGGCAGTGAACTGCAGCTGACCCACTGCTTCCAACCCCTCAgggtatatttgtgtgtgtgtctttgtgggcTTGGGTTGTGAACATAAAATACAAATGTCCATTCTCTGTAAGTTAATAGACTATCAAGTTTTCTTCTAACCCAGTGGGTGTAAAGGACTGCTTGGTGAGTACCACTTCCTCCCGTTTCGGCACATACCTGGCTCAAACCCTGGACCTCTGCTTCACAAACATACCTGACCGTCCTGCCTCAAGCATCTCTACCAGTCACACTTCTCAAAAGCTAGCAATTGAATGGTGCAAACGTGGATACTTAaggctgaggagtaagtttcacacatctCCATGTGCCACATATCTGGGCAAACTGAAATGATGCcatcatttcaaccagttttgcccgCTGGGAATCACCCTCTGAGAACAGAGTCAATCCCTTGTTGCCGATCACTGCTTTACTGACCTGGGGTGAGTTTCCCGAAAACCTTGTAGCGATTGTGATCATCGCTATTTCTCTGGACGACCCATACCAGTTCCACTAGCAGAATAAGCAACATTTGATGAATTGTGTTCATCGCAGAAGATTTACAATCAAATATCCTTTTTATAGTTATCCCTCTCTCACTGCTGTGTGGTTGGTTTGTCAAGAGAAACAATGTTATGAGTTCACTACAAGGCTTCTGGGAAACTCATTCCTGCTCTACCCTTTGACCATAATGTAACAAATTCGGGGGGGTTGCCCCAACAGGGACTCGAACCAGCAACTATCAACCTTAGCTGATAAGCCAACAGTTTCAAATCTCTTGACTAGGTCACTAGGTGTTGGATTAAGGTTGCTACAATAACAACAGCACATTGTCGCATTAGAAAAGGCCAGTGGGTCTGTCTTCCATCCTGCTCTCTCAGTAGGGAGGCTTGCTGCTTGCCTGCCTTCTTGAAGAAGGCAGTGATttaacagaagaagaagaattgCCGTTTTGAAACTATAGAGTCAGGGAACCATGCGCTCACACTACAGCTGGTCTTAAGTGTGACAGTGAGTAGCTGTTCTGTTTGATTAGCTCAGATAAGCATTAGTGGACAGCACCGGGAGATATAGGACGGTTCGATCACTCTCTCAGATGAATAGAGCCATAGAAATTCAATGACTAGATTATATGTCTATGCATAGAGCTCCCCGGTGAGACTACATAGACCCAAGCTCTGTGTGTGGACCAGAGGGCTGTCTACTGCCACCATGAGGGGGACAGGGCCATCCCAGATCAGGCATGCCCTGCGGAGACAGAGACAAAGCAAGGTGTTGTAGTGAATATTTTCTATTCATCGAGGCTCACGACTTGGACCTGGTTCAAGTATGCAAGCTTGCCACCGTGAATGCTTCGATGCCGCCTGATTAGAATTAAATAGGGTCAGGTTCAGGTATGTGAGAGACAAGAACAGGACATGAGAAAAGTGTTAGCCAGAACCAGTATGTGCTTGCAGAGGTGAGAGGTTGAAAGTGggtgagagaagggggagaggtgaaggaaggggtgagagaggttGATGGGTAACATAGTAAGCACTGAGGTTGAGGAAGTTGACTCTTACAGAGGTGAGGCGGGGGTGGGGAGAGATCTGGAGATGTGTCTGAAAACGACAGACCAGCTGTCACCAGCATGCTGGCTTGCCCATCTGTGAACACTGACATGCAGCGTATCTCCTTGTTTTGAATCCGTTGCATTTTCTACAGTCTTTGATGTTCCGCCACCATGGGTTTGAAAAGTGTTTTCTGTTCTCTGGTATTCTTGGAGAATACCGTGTTTTCTAATCTTGTCCATCTCTTGAGAGTGCCAcagtccccctcaggagactgaaaagatttggcatgggtcctcagatcctcaaaaggttctatagctaTAGGTTCTATTCATTGAGAGTTGCATCAttgcctggaatggcaactgcaaggcactacagagggtaatggaTGGCTGCTAGCGTTGGCCGGctcgtgtgtgggtgtgtttgtgtaaagGTTTGTGTAAAGGTTTGTGTGGTCAGATTACTGAGCCTGTTAAAGCCTATAGGCAAAACACTGATTCACTTATTGTGATTTTTTAGACAGGAGGGAATTAATGAAACATTATTCTTATCTGTAGACTACTGAGTGACGGTGTTAAAGCctacgtcctaaatggcaccctattccctatatagtgcacacatTTTGACCTGGAAACATAGACCAAGGCCCGTAACAATATGTTATTTGATTATGACTATGATGTTATAAAGTGTCCATGACCACTCACGGTCCTTTTGTACTCTTTTCACTGGTAACTAGTGTTAATCTTTGTGACAGAACAGAGTCATTTAGGTCTTCAAGCTGTCTTTGTCTCTATTCCTCTGTGcatccttcattctctctctttctctctctctctctctctttctttctctctctctgtcccctctccttttTCCACTTTGCTGTTCTTTCTTTCATTACAGATACATTTTTTTCTTCCTGTCACCTCTGCCTATATCTCTGctgtctttcctcctctcttttccctctgcacctactctccctctctcctgcatgcCCCAGGTGTGTGCAGGTCTCTGTCTGATGATGTGTTATCAGGGGACTGTGGAGCCGTCACACAGGGCCCAAGATCCTGCGATAACAACATTAAATTCACACACGGTCagatgcacacgcacgcacacacccccCTACTTGCACTGTTTTTTGACACCAAGCCTCATTTCTATTATTCATCTCTGCTATTATCATATTATTTACGTGATTAGTATAAAAATGTAAAACCTCTCCACTGTACATTCTTTTGTTGATCTAGTTTTTAAGTATGCCAAGTGTTTATGTCTggatgtgtttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagaaagAGACTTTGTGTGTGTACAATATATAGGactctgtctgtctcattgtctCCCTCCCAGTGGAAGACTTACCATTAGGCAGAAGAGGCAATTGCCTCTGGCCTCACATCATCAAGTGGCCTCATGAACTGTGCttaataaaatatat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471104.2 True 5770 mRNA 0.45 4 1021095 1042506

Neighbor

gene id symbol gene type direction distance location
rhbdd1 rhbdd1 coding upstream 159701 831698 ~ 861394 (+)
LOC110507300 NA coding upstream 189381 817321 ~ 831714 (+)
defbl3 NA coding upstream 272048 747901 ~ 749047 (+)
LOC110507292 LOC106580667 coding upstream 594439 377037 ~ 426656 (+)
LOC110507289 LOC106612414 coding upstream 644052 331171 ~ 377043 (+)
LOC110507305 LOC106579784 coding downstream 32672 1075178 ~ 1091699 (+)
LOC110507306 LOC106579799 coding downstream 79494 1122000 ~ 1124154 (+)
gmnc gmnc coding downstream 248079 1290585 ~ 1302492 (+)
LOC110507313 LOC106579790 coding downstream 538174 1580680 ~ 1601430 (+)
LOC110507041 LOC106612348 coding downstream 559610 1602116 ~ 1608092 (+)
G2039188 NA non-coding upstream 172593 848287 ~ 848502 (+)
G2039149 NA non-coding upstream 242998 777883 ~ 778097 (+)
G2038722 NA non-coding upstream 520210 500408 ~ 500885 (+)
G2039786 NA non-coding downstream 232453 1274959 ~ 1275187 (+)
G2039790 NA non-coding downstream 236081 1278587 ~ 1278799 (+)
G2039791 NA non-coding downstream 237637 1280143 ~ 1280396 (+)
G2039784 NA non-coding downstream 260392 1302898 ~ 1303303 (+)
G2039921 NA non-coding downstream 265685 1308191 ~ 1308416 (+)
G2040080 NA other downstream 400171 1442677 ~ 1498565 (+)
G2040180 atg16l1 other downstream 610334 1652840 ~ 1655336 (+)
G2040773 LOC106580643 other downstream 1491388 2533894 ~ 2542349 (+)
rpl35a LOC106612432 other downstream 1627883 2670319 ~ 2685738 (+)
G2040863 NA other downstream 1757275 2799781 ~ 2802001 (+)

Expression


Co-expression Network