LOC110507316 (fa9)


Basic Information

Item Value
gene id LOC110507316
gene name fa9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1825181 ~ 1848777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587231.2
AGATCAATTGCTGAGCTTGTGGGGAAAAGCCACCATTTTAGCAGACACCCACAGAAAACGGTAGGTTCTCTCTCATAACTAAAATCTAGATTAGTGAACCTAGCTGATCCCAGTTCAATCCCTTCAACTTCTACCTGGAGCGGAGAGATGTCGCAGTCTGACGGTTGGCTCCTCACAGTACTTCTGGTCTCAGTCGGTTCCCTGTGTGAATCAAAAGTGTTTCTGGAGCAGAGGCATGCAGTGCAGCTGCTCCGAGGGCCCCGGCGGCCCAGGGCCAACTTCTTCCTTGAGGAGATGATGCCCGGCAACCTGGAGCGGGAGTGCTATGAGGAGACCTGTTCCCAGGAGGAGGCTGCCGAGATCTTCCAGACCAAGGAGAAGACGATGGAGTTTTGGTATAAATATAAGAATCGGAATCCTTGCCACCACAACCCATGTAAGAATGGAGGAATCTGCACAATCGATCGGGATGGATACCTCTGTCTGTGTCCCCCACGCTACGATGGGAAAACCTGTGCAATAGAGGTGTTTGAGTGCCAGTTTAAAAATGGAGGTTGTCTGCATTACTGCACCAACCAGGAGCGCACCACAGGGGTCCAGTGCAGCTGTGCAGAGGGTTATCAGTTAGATGAGGATGGCAAGACCTGCTCTGAAACAGTGGCGTTCCCTTGTGGGAAGAAGCAGAGTGAGGCTTCGCTGGGCCGCTCTCTACTGGACGAGTCCGTGCCCTTCACCCCGACCTTCCGCCACTCTGACATGAACCTCACCATCACCACGGAGGGGGAAAGGAACTCGACCTCCACCCTACTTGCGATTAACTCAACCCAGCCAGGGGGGAACAGCACCGAGTACATGGAGGATGTTAATGAAGACACCCGGATAGTAGGAGGGCAGCtggagaggcagggaggaagcCCATGGCAGGTCATGCTCTGTAGGGAAGATGGATATGGCTTCTGTGGGGGAACTCTGATCAGTCAGCGCTGGGTGGTCAGTTCCGCACACTGCATGTATAAAACCCCTGACCATGTGACTATCGGGGACTATGACAAGCAGCGTCCCGACCCAGATGAGCAGAAGATTAAGGTGGCCAAGGTCGTCGTCCACCCTCACTTCCACGACTACACCTTCGATAGCGACATTGCTCTAGTCTACCTCTCTTCCCCCGTGGTGCTGAGCCCTGTGGCGGTACCCGCCTGCCTTCCCAATGGTCAGCTGGCCAGCCATCTCCAGCGGGAGGATGTGAGGGGCATGGTCACAGGCTGGGGCGCCACACAGTACCTGGGGCACTCCTCACGCTTCCTGAGGAAAGTCACTCTGCCCGTGGTCGACCAGCAGAAGTGCATCGGCTCCACAGAGCAGGTCATCACGGACAACATGTTCTGCGCGGGCTACCTGGAGGCCAGCTTGGATGCCTGCAGTGGGGACAGTGGGGGTCCCTTTGTGGTCAACTACCGCGGTACCTGGTTCCTCACAGGGGTGGTGAGCTGGGGGGAGAAGTGTACCACCAAGGGGAAGTATGGCATCTACACCCGGCTAGGGAACTACCTGCACTGGATACAAGATACTATAGAAAGGCAGGTGCATAACAGTACACATAAATGAGGTGCAGCTCAGAGACGATCCCAATTAATTCCCTACCCCTTGACCCTTCAATGATTGCAGCTCTGAtcatctgaagggtctggataggtgCAAGCAGTTTAGTGGTGACCTTTACTATATTGCTGACACACCTGCAAAGATCGAAGGGTTGTGGGACAAGGGTAAGGCCCAAATTGGGAGCGCTGATGATGAATTCCAAGTCAAACCCTAGCCCCAACAAGGTATTAGCAATACAGTAATAGCTTGTAATTGACCTCTGAGGGAATTTTAGGATACATCCAATCCTTTCAGATTTACAGAAATGTCTGAGTGCATTATGAAATATAAATTGCACCTGGGGTGAGTTCAGGAGAATACAATGCAACAATGTGTTTAGATAAATGCATTTTGAAGACCGGATTTTCTGTCATGATGTAAAATTGGGAATCATGTCAGCTCAATTCATTGCATTATTCTGACTGTTTTAAATTCACTGACCATGACCCTGGTGCTTCAGTTACCTTATTTCATTTGATTGTGAATAACATAATTTACACACAAACTGTGCACATTATTAACCAGGTAAGATTTGGTTCTGAGAGCACTTGATCAGTTTCACCGCCccatttacatttttttcccccaaagtAATACAACGCTTCAAGTTTTAAGGCTGTTAAATTGAGTTTGTTGGAGTGTTTCGTGAAAGTACATAAGTTGCCACTAGCAATGAGTAGTTTGAATTATTTCAAACTACTTATTGTGCATTAAAGTGATAGTTCACGCCAATCAATGTATCATGTTTTTAAGACATCAACAGTGGCCAAATGAGATTGAGAGGAATCTAGCTCAAGGCCATAGGTAACGTTTCAAATAAAGACGACCTAGAGATCT
>XM_021587232.2
AACTAAAATCTAGATTAGTGAACCTAGCTGATCCCAGTTCAATCCCTTCAACTTCTACCTGGAGCGGAGAGATGTCGCAGTCTGACGGTTGGCTCCTCACAGTACTTCTGGTCTCAGTCGGTTCCCTGTGTGAATCAAAAGATGGAGTTTTGGTATAAATATAAGAATCGGAATCCTTGCCACCACAACCCATGTAAGAATGGAGGAATCTGCACAATCGATCGGGATGGATACCTCTGTCTGTGTCCCCCACGCTACGATGGGAAAACCTGTGCAATAGAGGTGTTTGAGTGCCAGTTTAAAAATGGAGGTTGTCTGCATTACTGCACCAACCAGGAGCGCACCACAGGGGTCCAGTGCAGCTGTGCAGAGGGTTATCAGTTAGATGAGGATGGCAAGACCTGCTCTGAAACAGTGGCGTTCCCTTGTGGGAAGAAGCAGAGTGAGGCTTCGCTGGGCCGCTCTCTACTGGACGAGTCCGTGCCCTTCACCCCGACCTTCCGCCACTCTGACATGAACCTCACCATCACCACGGAGGGGGAAAGGAACTCGACCTCCACCCTACTTGCGATTAACTCAACCCAGCCAGGGGGGAACAGCACCGAGTACATGGAGGATGTTAATGAAGACACCCGGATAGTAGGAGGGCAGCtggagaggcagggaggaagcCCATGGCAGGTCATGCTCTGTAGGGAAGATGGATATGGCTTCTGTGGGGGAACTCTGATCAGTCAGCGCTGGGTGGTCAGTTCCGCACACTGCATGTATAAAACCCCTGACCATGTGACTATCGGGGACTATGACAAGCAGCGTCCCGACCCAGATGAGCAGAAGATTAAGGTGGCCAAGGTCGTCGTCCACCCTCACTTCCACGACTACACCTTCGATAGCGACATTGCTCTAGTCTACCTCTCTTCCCCCGTGGTGCTGAGCCCTGTGGCGGTACCCGCCTGCCTTCCCAATGGTCAGCTGGCCAGCCATCTCCAGCGGGAGGATGTGAGGGGCATGGTCACAGGCTGGGGCGCCACACAGTACCTGGGGCACTCCTCACGCTTCCTGAGGAAAGTCACTCTGCCCGTGGTCGACCAGCAGAAGTGCATCGGCTCCACAGAGCAGGTCATCACGGACAACATGTTCTGCGCGGGCTACCTGGAGGCCAGCTTGGATGCCTGCAGTGGGGACAGTGGGGGTCCCTTTGTGGTCAACTACCGCGGTACCTGGTTCCTCACAGGGGTGGTGAGCTGGGGGGAGAAGTGTACCACCAAGGGGAAGTATGGCATCTACACCCGGCTAGGGAACTACCTGCACTGGATACAAGATACTATAGAAAGGCAGGTGCATAACAGTACACATAAATGAGGTGCAGCTCAGAGACGATCCCAATTAATTCCCTACCCCTTGACCCTTCAATGATTGCAGCTCTGAtcatctgaagggtctggataggtgCAAGCAGTTTAGTGGTGACCTTTACTATATTGCTGACACACCTGCAAAGATCGAAGGGTTGTGGGACAAGGGTAAGGCCCAAATTGGGAGCGCTGATGATGAATTCCAAGTCAAACCCTAGCCCCAACAAGGTATTAGCAATACAGTAATAGCTTGTAATTGACCTCTGAGGGAATTTTAGGATACATCCAATCCTTTCAGATTTACAGAAATGTCTGAGTGCATTATGAAATATAAATTGCACCTGGGGTGAGTTCAGGAGAATACAATGCAACAATGTGTTTAGATAAATGCATTTTGAAGACCGGATTTTCTGTCATGATGTAAAATTGGGAATCATGTCAGCTCAATTCATTGCATTATTCTGACTGTTTTAAATTCACTGACCATGACCCTGGTGCTTCAGTTACCTTATTTCATTTGATTGTGAATAACATAATTTACACACAAACTGTGCACATTATTAACCAGGTAAGATTTGGTTCTGAGAGCACTTGATCAGTTTCACCGCCccatttacatttttttcccccaaagtAATACAACGCTTCAAGTTT

Function

NR:

description
coagulation factor IX-like isoform X1

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587231.2 False 2478 mRNA 0.50 8 1825181 1848777
XM_021587232.2 True 2009 mRNA 0.50 7 1825257 1848551

Neighbor

gene id symbol gene type direction distance location
LOC110507042 dgkd coding upstream 10736 1763705 ~ 1814445 (+)
LOC110507315 LOC106579793 coding upstream 73454 1722598 ~ 1751727 (+)
atg16l1 atg16l1 coding upstream 147928 1625203 ~ 1677253 (+)
LOC118944727 NA coding downstream 43677 1892454 ~ 1905690 (+)
LOC110507322 LOC106580637 coding downstream 117752 1965604 ~ 1972042 (+)
LOC110507327 LOC106612439 coding downstream 646882 2495659 ~ 2498344 (+)
LOC110507330 LOC106580646 coding downstream 718989 2567766 ~ 2650546 (+)
LOC110507331 NA coding downstream 736234 2585011 ~ 2595625 (+)
G2040241 NA non-coding upstream 79561 1703518 ~ 1745620 (+)
G2040235 NA non-coding upstream 94913 1696649 ~ 1730268 (+)
G2040221 NA non-coding upstream 136560 1664941 ~ 1688621 (+)
G2040172 NA non-coding upstream 237196 1570075 ~ 1587985 (+)
G2040169 NA non-coding upstream 260409 1564361 ~ 1564772 (+)
G2040560 NA non-coding downstream 358840 2207617 ~ 2212183 (+)
G2040605 NA non-coding downstream 434080 2282857 ~ 2286192 (+)
G2040607 NA non-coding downstream 437612 2286389 ~ 2294787 (+)
G2040608 NA non-coding downstream 439278 2288055 ~ 2293431 (+)
G2040180 atg16l1 other upstream 169845 1652840 ~ 1655336 (+)
G2040080 NA other upstream 326616 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1006713 817321 ~ 831714 (+)
G2040773 LOC106580643 other downstream 685117 2533894 ~ 2542349 (+)
rpl35a LOC106612432 other downstream 821612 2670319 ~ 2685738 (+)
G2040863 NA other downstream 951004 2799781 ~ 2802001 (+)
LOC110507334 LOC106612406 other downstream 965499 2813649 ~ 2815411 (+)
G2040882 NA other downstream 985319 2834096 ~ 2838927 (+)

Expression


Co-expression Network