LOC110507328 (LOC106580643)


Basic Information

Item Value
gene id LOC110507328
gene name LOC106580643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2518713 ~ 2542284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587248.2
atacccataatgcATAGTTTGCGGACATGCCTTGACGCACATTGTGTGCACATGCGCTGTTCTTGTGGAAGAGCCGGTGTATCATGGCGACATACGTGGATATTCTGAAGAGCGAGTTTCCCGAAATTGACACCGAAGTGTTCGAATATATCACGGGTGTGTTGGACTGTGGAGGGGTGGAGtttgaggatggagaggaggtgtATGATGCGATTGGAGGGCTGTTGCAGGGGTCGTCGGCTGACTGTAAAAACGAGGATGACATTCGGGACATCTGTCAGCAGATGTTCAACACTCTTAAACTGAGTAACGGCCATGCCGCTTCAAAGCAAGTGCTGCTCGACGCTCCGGTGCGGTTGTCTCAGATATCTGCAGAGTGTGTATCTGTCACTAACGATGTCCAAGGGATCTGGATGATGAAGAGGGGCCAGAATACAaCTGTGGACGCGAGGAAGCTAGAGAAGGCCGAAGCCAAGCTGAAGCAAAAGCAAGGGAGAAGGAATGAACGGGATTCGCAAAAAACGACTAATCCGCTgGTACTGGAGGAGGCATCAGCCAGCCAGGCCAGTAGCAAGAAAGACAGTCGTGTCGACTTGTCCGGGAAGAATCGCAGCTACGATATCCGCATCGAGAACTTTGACGTGTCGTTTGGCGAGAGGTCTTTGCTGCAGGGGGCGGAGCTGTCTCTGTCAACAGGTCGCCGCTACGGCCTGATTGGCCGCAACGGCCTGGGGAAGACCACGCTGCTAAAGATGCTGGCGAGCCGCAGCCTGCGTGTCCCTGCCCACATCACAATCCTGCACGTGGAGCAGGAGGTCGCTGGAGACGACACAGGGGCACTTCAGAGCGTGCTGGAGAGCGACACGGTCCGGGAGGGTCTCCTGACAGAGGAACGCCTGCTCAATGCGCGCATAGCCAACGGAACTGCTGAAGGAATGGAAACTGTTCGACTGTCGGAGATCTATGCTAAACTGGAGGAAATTGAAGCAGACAAGGCACCTGCCCGAGCTTCAATCATCCTATGTGGTTTAGGTTTTTCTCCTAAAATGCAAACGCAGACCACCAAGGAGTTTTCTGGAGGCTGGAGGATGAGATTAGCTCTGGCTAGAGCTCTCTTTGCCAAGCCTGATCTTTTGTTACTTGACGAGCCCACCAACATGTTGGATGTCCGAGCCATTCTTTGGCTGGAGAATTACCTGCAGACCTGGCAGACCACCATCCTGGTGGTGTCCCACGACCGGAACTTCCTCAACGCCGTGGTGACTGACATCATCCACCTGCACTCGCAGCGGCTGGAGAGTTACCGCGGCGACTACGAGAACTTTGTCAAGACCAAAGAGGACCGCCTGAAGAACCAGCAGAGGGAGTACGAGGCCCAGTTTCAGTACAGAGAGCACATCCAGGTGTTTATCGACCGGTTCAGATACAACGCCAACAGAGCGGCACAGGTGCAGAGCAAACTGAAGCTCTTAGAAAAACTGCCTGAACTCAAACCTCTGGAGAAGGAAACCGAAGTCACCTTAAAGTTCCCTGATAACTTTGAGAAGCTGTCTCCCCCGGTGCTCCAGTTGGATGAGGtggagttctactataacactgaCCAGCGCCTCttcacacagctgtctgtgtctgcagacCTGGAGTCTCGCATCTGCATCGTGGGTGAGAACGGGGCGGGTAAATCCACCATGCTCAAGCTACTGATGGGAGAGTTAACGCCTGTCAACGGCATCAGACACGCCCATCGGAACCTGAAGATTGGTTATTTCAGTCAGCACCACGTGGATCAACTGGACCTCAATGTGTGTTCAATTGAGCTGCTACTCAACAAATTCCCAGGTCGTAACGAGGAGGAGTACAGGCACCAACTGGGTGGCTATGGGATAACCGGTGAGCTGGCAACTCGGCCAGTGGCCAGTCTGTCAGGAGGGCAGAAGAGCCGGGTGGCCTTCGCTCAGATGACCATGCCTTGCCCAAACTTCTATATCCTTGATGAGCCGACCAATCACCTGGACATGGAAACGATCGAGGCGCTAGCGAAGGCACTCAACAAATTCAAAgGTGGGGTGGTCCTTGTCTCTCACGACGAGCGTCTGATCCGGATGGtgtgcagagagctgtgggtctGTGAGCACGGGAACGTGCGGCGAGTGGAGGGGGGCTTTGACGAGTACCGGGATATCTTGCAGGAACAGTTCCGCAAGGAGGGCTACCTGTGAGGGACAGGAAGGACTTTCCAAAACCTACCACCCCAGGCAACTTGCCCATTACGCCATCTATGACAGACATGCCAAGTTACCAATTGACTTCAACCCCAATAACCTAAAGCCCCCCCACTCTCTATTCCCCGACTGCCAATCATCATCCTCCGAGTGAGAACTGAGTTTTACTGGCTGCTTTCCCATCATCCTCTCTGCTCCCCCACACCACCGTTTGTGTTTTGTTTGCCATTTAGCTCGGCCCGGCAGTTCAAAGTGACATACTCTTGTCTATTGTCCTGAAGCAGGCAGGTTTTAGGCTACATGGAGTGCAAACTGTGTCCAAATGGAATGTCAATTGTGCGTGCACTCTGTATACTCAACTGGCCTCCCCACTCCCATCCTTCCTGATCATAATAGTTGGAGCTGGTTTGGTTCACTTAACATCAAGGAGGATAGTCCATCTTGTGAAGGTGTGGGTGCTGTACCCTTTAACTGTTAACCCCATGTGGGCAGCCATCTTGGAATAATGCTACATCTTTTTAGCTCTTAGTAATATCAGTTTAGGGCCAAATATGTACATCAGAAAATTAACAAAATTCTTGATTTCTTAATCCGTGTCGaatatgtgtgcatgtgttttaTGTGAttgagtgggacagagagagagcgaggataCATTTCAAGTGCATATGGATTGATTTTTCTCCTGAACATGTGTGTTCTTGGAAGGAGAGGGAGCATCTCTTTTGTCAGTGGAACCCGGGGTGAAGCTGAAATGACTCCCTGTTCCCAACATAGTGTAGTATTTTGGCAACTAGCCAAAATGGTGTCATTTCAGACACCCCTGGtcttgttcattaggcaccaaactaaataaaacagtctgaaacagggagggattaCGTGGACTTGTCCTATAAGAAATGCTCATTTTCTGTTGCGTGCCCGAATGAAGACAATCCTGGAAACATCCATATCTGTGTCAGCATGGGAAACCACCAGCACAAAAACAATTATTTCTACAACAGCAGCAGCTGGCTCCAGGTCTCTCTGCTGCGTCTTCCCAACAATCTCCAACCAAGTAAAGTATTTAAGCATAAAGGCACcaagggtttgtggtatatggccaatataccacagctaagggctgttcttacgcacacagcccttagccgtggtatactggccatatatcacacacccttggtgccttattgctgttataaactggttaccaacataattagaggagtaaaaataaatgttttgtcatacccatgctACACGGTCTGAAATAACACGACTGTCAGctattcagggctcaaaccacccagttgaTTTATCTAAGAAAttcagaatatatatatttttaaatcctcCTGTTACATTGCTAACTTATAAATAGGTGTTTTAAGAGCTATTCAATCATAACTCCATACTAATAAAACAGCTTTAATAATCCA

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family F member 3-like

GO: NA

KEGG:

id description
K06158 ABCF3; ATP-binding cassette, subfamily F, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587248.2 True 3664 mRNA 0.50 21 2518713 2542284

Neighbor

gene id symbol gene type direction distance location
wdr95 LOC106580697 coding downstream 53235 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 112495 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 346926 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 552062 1937827 ~ 1966651 (-)
trmt9b LOC106580636 coding downstream 585007 1906338 ~ 1933706 (-)
LOC110507043 LOC106603827 coding upstream 394244 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 403638 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 414356 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 695117 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 705526 3247810 ~ 3255113 (-)
G2041626 LOC106612439 non-coding downstream 20384 2496500 ~ 2498329 (-)
G2041613 NA non-coding downstream 23013 2480646 ~ 2495700 (-)
G2041498 NA non-coding downstream 221054 2281840 ~ 2297659 (-)
G2041710 NA non-coding upstream 85763 2628047 ~ 2628375 (-)
G2041725 LOC106584099 non-coding upstream 107210 2649494 ~ 2655785 (-)
G2041724 LOC106612432 non-coding upstream 128019 2670303 ~ 2685780 (-)
G2041737 NA non-coding upstream 136375 2678659 ~ 2679463 (-)
G2041752 LOC106612343 non-coding upstream 162087 2704371 ~ 2709010 (-)
LOC110507298 spcs2 other downstream 1747976 769005 ~ 776178 (-)
G2041883 NA other upstream 353292 2895576 ~ 2896391 (-)
G2041885 NA other upstream 356703 2898987 ~ 2899388 (-)
G2042608 NA other upstream 858295 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 996900 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1801315 4343599 ~ 4348409 (-)

Expression


Co-expression Network