LOC110507330 (LOC106580646)


Basic Information

Item Value
gene id LOC110507330
gene name LOC106580646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2567766 ~ 2650546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965677.1
AGTCTGCCCTCACATTCTGCGCTTGCGTATTATCAACCTAGCGGCTGCAGAGTAGGGAGAATCGGTGGGAGTTAGCTAGGTGTGTAATGGCGGCTTCGGTGTTGCTGTCTGCGGAGAACACCGGACCGACTTTTGCGGTCGGCAATTCTGGAGTGGTCGGGTCTCCCGGTAATGGAGTAGGGGCACCGGGTCCTGCGTCTTGGAATCGGTCTCTGGACAGGGCATTAGACGAAGCCTCGGCAACTGGTTGTCTCAACCTCAGCGGCAGGAAACTGAAGGAGTTCCCGAGGAGCGTCGCCAACCACGACCTCACAGACACAACTCGGGCCGATCTGTCCCGTAACCGTCTGCCAGAACTGCCCGTGGAGGTGTGTATGTTTGTTTCTCTGGAACACCTTAACCTCTACCAGAACTGCCTGCGCTCACTGCCCGAGAGTCTTCTCAATCTCCAGGCCCTCACCTACCTGAACATAAGTCGAAACCAGTTGTCGACCCTGCCCAGCCCGGTGTGCAGTCTGCCGTTGAAGGTCCTGATTGCCTGTAACAACAAGCTTGTCTCCCTTCCCGAAGAGCTGGGCCAACTACTACAGCTCACAGAACTggaCGTGAGTTGTAATGAGATCCAGACACTCCCTCCTCAGGTTGGTCGACTGGACTCGCTGCGAGACCTTAACATCCGCCGCAACCACCTGGCCCGCTTGCCCCCAGAGCTGTCTGAGTTGCCCCTGGTGCGTCTGGACTTCTCTTGTAACAAGGTGATATCCATCCCTGTGTGTTACCGCAACCTGCGCCACCTACAGAGCATCGTGCTGGACAACAACCCACTACAGAATCCACCTGCACAGATTTGTATAAAGGGGATGATCCATATATTTAAGTATCTGAACAATGAGGCCAGCAAGACTCCACCTGAGCTCCCAGACTACGACAGGAGACCCCTCCCCTTCGGATCCTGTGTGGAGGAGCTATACCCTGACCGGCCGTACGGCGCACTGGACTCTGGCTTCAACAGCGTGGACAGTGGAGACAAGAGATGGTCAGGCAACGAGCCCACAGATGAGTTGTCGGACCTGCCACTGCGTGTGGCAGAGATCACCAAAGAACAGAGACagcggagggagagggaggagcacAGGACAACTGGCTCCCATCCTGTTACCAACGGCACATtaGAGGGAGACCTGGAGCAGATAGACTTTATAGACAGTTGtgcaggagaggaggaagagcagggtaggagaggagaagtAGCAGAAACCATCAGCCTCAGTTCCCAGTTCATGGCATACATCGAGCGCCGCATCACTGgagagAGCTCTCCAGTCAAGTCCAACTCCTCCAGAGACTCAAGGACAGACGACCCGAGGCGACACAATTCTCTGCAGAACAGGACTGTCCATGATCCAACCTCTTCTACCTCTCATAATCAGAGAGGGTCAGGGGCTGGGGTTGGTGCAGGTCCGAGCGTGGAGCGCGTGCGGAGGATGGCCCAGTTGGCCGCCCTGCGGtacgaggaggagaggcagaagcCACGCTCAGTGCAGCGGGACGCCGTCATGACCTACGTCAAGCACAAAGTGTCTCAAAGTCCTACCAAGCTGAGTCCCACAGAGAACGAGAACGCGTACCCCTCCAGGCGTTCCACCCACACGGACGACTCGGCCCTCTTCATGAGCGAGTACCAGCCTCGCATGGTGTTTGAGATAGACACTGACACCAACACCATAAAGAGGAAGCCTGGCACTCACAAGCAGTCTCTTACTGTGTCTGGGATGTCCATAGATGGGTGTCTCTCCTATCCTGCCGATATTGCCCCAACTTGTCTACTGCAGCAGGGCGAGGATCGCTgctcctccctgtctcccacaGCCCTCCAATCACCTTCTTACCCCGGCCCTGTTACTCCGCCCTCCTGCTGTGGACCCGCCCAGCGGCCGGACAGCTTCTTGTTTCGCCTCAGCCAGAaggaagagcagaggagagGTAATGGTGCCGCCCCCAGGCCAGAGCCTGAAGATGTGACCCCTACCCAGGCTCAAGGCCCCATGGGAGAGGAGGCTGCTCTGGTGGAGCAACTGCGGAAGAACATAGAGTCGCGTCTGAAAGTGTCCTTGCCAAGCGACCTGGGAGCAGCACTGACCGACGGGGTCGTCCTCTGCCATCTGGCAAATCACGTGCGGCCACGATCCGTACCCAGCATCCATGTGCCCTCCCCTGCTgtgCCCAAACTGACGATGGCCAAATGTCGGCGGAACGTGGAGAACTTTCTGGAGGCGTGTCGCAGGATCGGGGTTCCACAGGAGAGGCTGTGCACAGTGGAGGAGGTTCTGGATGGCCGGGGAGGCTGTGTTTACGGGACGCTGGGGGTCCTGCTCTCCATGGCTCCTCCCCCCCTCCTAATGCCTTCACCTCCGGCCCAGCTGGCAGGCTTCGCCCTCTTCTATCTGTCCATCATGTCTGTACTGTGTGCCCTGTATTGCCACCTGGTGCCCCACCTCTGAACTGTGTCTGGACAACACAATCCCTTCCTCACATTCCTCATCCCACAACAAACGGACTCTCTACCACTTGTGCACACACACTATCTCAAACACACACCACTCGCACTCCTCTGTGCTTCTCATTTCATATTGCGGTGTTTTCCATCACTGCAGCATTATCTATTCAGACACAGCAGTCAGCAGAACTCAACAAGGGAAAAACACAAGAATGAGTGGAccactccctctctgtcccactcTGCCTTAACAAAGAGGAGCGCTCGCCACTGCCTGGTTTCCCATCCACTGAAACGGGCACAACTCCATATGCCAAATACCATATAGTAGGTTTTATCTTTTGTTGTTCCAGTTGTTTGTTGGGGAAGGTTACTTGCGTCTCCTCAAGGAGTGGAAAGGTGGACCTTCGATGCTCCCTCGTTACCCTTCTGTCATGTACTGGCACTCCCCCCAtttgagagagacagcgagacccTGGAGGTGGCTGTGTTGTCACTGAACTGTCCGCTACTGTACCTACCTACTGAACCTCCGTCTGTGCCTTAAGTTTGTCCGCCTGCCAACATGTGTGTTTTAGATGGAACATTCCCACCCGAAGCCACTTCCATTGCACTAATAACATCAATCAAGTCGGAGTGCTTGTCCAATGTAGCCTACGTGctgcttcctccctcctcctgtccctgaGAAGAACCAACCACAAGTAATCTGACTAATCAATGCCGAGcgcttctcttctctcctgactCTAGTACAGCTTAGCCTAAGCTGCAAAGTCAGTCTGAAGTTTTAGCCTAATCAAGAGAGCAGGTCGGCGAGGGTTATGTTAGCCTTTGAGTCTTTGCTGACGCACAATCAAGTTTCCGACCGGAACCCTTTTTATTTCCTTGACTGTCTGTGATCCAGCCCCCCTCTGTCATAATGCTCATTTTGTGGCTCCGGGGAGATGTTTCCGCtagatacagatctaggatcagctacacctccccaatcctaacctttaAAGAGGAACTGAAACGCTCAAATCACCCTACATTTTACAAGGTATGTAACCTTGTTGAAGGTGATGTTCTGAAAATACTTTTCAAACATAATATGATAGATTCGTAGAGTGCCTAGCACAagcttcttttaaaaaaaaacgttatttaacttggcaagtcggagagatatacctgctggaacgcgtgttTCAGGTGGGtgctgcaatggtgaccagcgagctgagaaaaggggg
>XM_036965678.1
TCTGCCCTCACATTCTGCGCTTGCGTATTATCAACCTAGCGGCTGCAGAGTAGGGAGAATCGGTGGGAGTTAGCTAGGTGTGTAATGGCGGCTTCGGTGTTGCTGTCTGCGGAGAACACCGGACCGACTTTTGCGGTCGGCAATTCTGGAGTGGTCGGGTCTCCCGGTAATGGAGTAGGGGCACCGGGTCCTGCGTCTTGGAATCGGTCTCTGGACAGGGCATTAGACGAAGCCTCGGCAACTGGTTGTCTCAACCTCAGCGGCAGGAAACTGAAGGAGTTCCCGAGGAGCGTCGCCAACCACGACCTCACAGACACAACTCGGGCCGATCTGTCCCGTAACCGTCTGCCAGAACTGCCCGTGGAGGTGTGTATGTTTGTTTCTCTGGAACACCTTAACCTCTACCAGAACTGCCTGCGCTCACTGCCCGAGAGTCTTCTCAATCTCCAGGCCCTCACCTACCTGAACATAAGTCGAAACCAGTTGTCGACCCTGCCCAGCCCGGTGTGCAGTCTGCCGTTGAAGGTCCTGATTGCCTGTAACAACAAGCTTGTCTCCCTTCCCGAAGAGCTGGGCCAACTACTACAGCTCACAGAACTggaCGTGAGTTGTAATGAGATCCAGACACTCCCTCCTCAGGTTGGTCGACTGGACTCGCTGCGAGACCTTAACATCCGCCGCAACCACCTGGCCCGCTTGCCCCCAGAGCTGTCTGAGTTGCCCCTGGTGCGTCTGGACTTCTCTTGTAACAAGGTGATATCCATCCCTGTGTGTTACCGCAACCTGCGCCACCTACAGAGCATCGTGCTGGACAACAACCCACTACAGAATCCACCTGCACAGATTTGTATAAAGGGGATGATCCATATATTTAAGTATCTGAACAATGAGGCCAGCAAGACTCCACCTGAGCTCCCAGACTACGACAGGAGACCCCTCCCCTTCGGATCCTGTGTGGAGGAGCTATACCCTGACCGGCCGTACGGCGCACTGGACTCTGGCTTCAACAGCGTGGACAGTGGAGACAAGAGATGGTCAGGCAACGAGCCCACAGATGAGTTGTCGGACCTGCCACTGCGTGTGGCAGAGATCACCAAAGAACAGAGACagcggagggagagggaggagcacAGGACAACTGGCTCCCATCCTGTTACCAACGGCACATtaGAGGGAGACCTGGAGCAGATAGACTTTATAGACAGTTGtgcaggagaggaggaagagcagggtaggagaggagaagtAGCAGAAACCATCAGCCTCAGTTCCCAGTTCATGGCATACATCGAGCGCCGCATCACTGgagagAGCTCTCCAGTCAAGTCCAACTCCTCCAGAGACTCAAGGACAGACGACCCGAGGCGACACAATTCTCTGCAGAACAGGACTGTCCATGATCCAACCTCTTCTACCTCTCATAATCAGAGAGGGTCAGGGGCTGGGGTTGGTGCAGGTCCGAGCGTGGAGCGCGTGCGGAGGATGGCCCAGTTGGCCGCCCTGCGGtacgaggaggagaggcagaagcCACGCTCAGTGCAGCGGGACGCCGTCATGACCTACGTCAAGCACAAAGTGTCTCAAAGTCCTACCAAGCTGAGTCCCACAGAGAACGAGAACGCGTACCCCTCCAGGCGTTCCACCCACACGGACGACTCGGCCCTCTTCATGAGCGAGTACCAGCCTCGCATGGTGTTTGAGATAGACACTGACACCAACACCATAAAGAGGAAGCCTGGCACTCACAAGCAGTCTCTTACTGTGTCTGGGATGTCCATAGATGGGTGTCTCTCCTATCCTGCCGATATTGCCCCAACTTGTCTACTGCAGCAGGGCGAGGATCGCTgctcctccctgtctcccacaGCCCTCCAATCACCTTCTTACCCCGGCCCTGTTACTCCGCCCTCCTGCTGTGGACCCGCCCAGCGGCCGGACAGCTTCTTGTTTCGCCTCAGCCAGAaggaagagcagaggagagGTAATGGTGCCGCCCCCAGGCCAGAGCCTGAAGATGTGACCCCTACCCAGGCTCAAGGCCCCATGGGAGAGGAGGCTGCTCTGGTGGAGCAACTGCGGAAGAACATAGAGTCGCGTCTGAAAGTGTCCTTGCCAAGCGACCTGGGAGCAGCACTGACCGACGGGGTCGTCCTCTGCCATCTGGCAAATCACGTGCGGCCACGATCCGTACCCAGCATCCATGTGCCCTCCCCTGCTgtgCCCAAACTGACGATGGCCAAATGTCGGCGGAACGTGGAGAACTTTCTGGAGGCGTGTCGCAGGATCGGGGTTCCACAGACCCAGCTGTGCCTGCCCCTCCACAtcctggaggagagagggctCCCCCAGGTGGCCGGGACGGTGTGTGCGCTCCTGGAGCTGGCCCCGCCCAAACACACAACTTCCCCCACCACGACCATTACTACCCCTCTGGCAATTTAGTGCAGCGGAGTTCCACATTCACTCTCATGGATGGACAGACACAGgacccactctctccctctccgagGGTATGTTACATGACTTTCCCTCTCGACCACCCCTGGCACAAGGGTGTGAAGAGAAGACACCCTAAAAAATGCTACCCCATTTTCCCCCAGCCTCCTCAGCCATACAGGGGCACCCCAGCCTTCCCAGACAGGTCTTCcccaatggagagagagagagggaacacaaGTAGGTAAAAGAAAGGGTTGACTGTCTTTCCCCCAGTGTCCCCACACAGACTGCTTATGACTTGCAGCCtctaaagagagacagacaaccaAGATTGTTCCAGACAAACGGTCAGTTGGACGGCAAGGAAGAGGGTTCTTTTTTTTTCTAATATTAGTCAGTTGTCTTCTCTCacttttctctccatcctccttttACTGATGTACACCAGGGATTGTTTTATTTTACAccattactattattattgcatCTCATTTCTCATATTCATTTTACTGTCACATGTCAGATCCTTGCAGGTCAGCGGGGTCAGGTAGGGGGAAGGGTTCGGAGACTAGGAACTTGTCGGTTGTCTAAGTAACACAGTCATGTGAGCAACAGTCACGTTGATGCTGCCAACACTTACAATGGCTGTTATGAAATGAACCCGTCTTCTCCATTTTTTTATTGTGTGGTCAAGTCACAAGCTAGCTGATTCAAAAGCGATGctggagtagaaagagagagggagctctGGGAATCTCTGTTTTATTCTTTCTCACAGTGTTGTGTACAAATATatactgagtgaacaaaacattaggaacacattcctaatattgagttgcaccccttttacCCTCAgatcagcctcaattcgttgggacatggactctaaaaggtgtcaaaagcgttccacagggatgct

Function

NR:

description
LOW QUALITY PROTEIN: leucine-rich repeat and calponin homology domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965677.1 False 3735 mRNA 0.54 22 2567766 2640205
XM_036965678.1 True 3361 mRNA 0.55 22 2567768 2650546

Neighbor

gene id symbol gene type direction distance location
LOC110507327 LOC106612439 coding upstream 69422 2495659 ~ 2498344 (+)
LOC110507322 LOC106580637 coding upstream 595724 1965604 ~ 1972042 (+)
LOC118944727 NA coding upstream 662076 1892454 ~ 1905690 (+)
LOC110507316 fa9 coding upstream 718989 1825181 ~ 1848777 (+)
LOC110507042 dgkd coding upstream 753321 1763705 ~ 1814445 (+)
rpl35a LOC106612432 coding downstream 19773 2670319 ~ 2685738 (+)
abcc5 LOC106580650 coding downstream 37458 2688004 ~ 2752049 (+)
rnpepl1 rnpepl1 coding downstream 113857 2764403 ~ 2799047 (+)
LOC110507256 LOC106612406 coding downstream 157737 2808283 ~ 2810261 (+)
LOC110507334 LOC106612406 coding downstream 163103 2813649 ~ 2815411 (+)
G2040774 LOC106580643 non-coding upstream 38796 2528011 ~ 2528970 (+)
G2040768 NA non-coding upstream 47460 2518728 ~ 2520306 (+)
G2040610 NA non-coding upstream 266387 2289651 ~ 2301379 (+)
G2040607 NA non-coding upstream 272979 2286389 ~ 2294787 (+)
G2040608 NA non-coding upstream 274335 2288055 ~ 2293431 (+)
G2040842 NA non-coding downstream 71741 2722287 ~ 2740038 (+)
G2040761 NA non-coding downstream 92396 2742942 ~ 2743297 (+)
G2040865 NA non-coding downstream 151856 2802402 ~ 2802622 (+)
G2040874 NA non-coding downstream 160965 2811511 ~ 2812731 (+)
G2040877 NA non-coding downstream 165296 2815842 ~ 2890204 (+)
G2040773 LOC106580643 other upstream 25417 2533894 ~ 2542349 (+)
G2040180 atg16l1 other upstream 912430 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1069201 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1749298 817321 ~ 831714 (+)
G2040863 NA other downstream 149235 2799781 ~ 2802001 (+)
G2040882 NA other downstream 183550 2834096 ~ 2838927 (+)
G2043193 NA other downstream 1754912 4405458 ~ 4406126 (+)

Expression


Co-expression Network