rpl35a (LOC106612432)


Basic Information

Item Value
gene id rpl35a
gene name LOC106612432
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2670319 ~ 2685738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587251.2
CTGAGCCGAACAAGCTggctcactgaaaagagccgGAGTACCCATCACTATCATGCGCCTCTGTCGTCACCGACTACGTACATTTCCCAGCATTCCGTTCCGACTTCCTTTTCCTCCATTTTTCTTACAGTGCAGGTTTTTCCGTGCCTGGGAATAGACTCAAGATGCCAGGAAGACTGTGGAGCAAGGCCATCTTTGCCGGGTATAAGCGCGGCCTAAGGAACCAGCGGGAGCACACCGCCCTGCTGAAGGTGGAGGGAGTGTACACACGGGAGGAGGTTGACTTCTACCTAGGCAAGCGCTGTGCTTACGTCTACAAGGCTAAGAAGAACACAGTGACTCCTGGTGGCAAGCCCAACAAGACGCGGGTAATCTGGGGCAAAGTCATGCGTGCTCATGGCAACAGTGGAATGGTGCGGGCCAAGTTCAGCAGTAACCTCCCAGCAAAAGCCATGGGACACAGAGTCAGAGTGATGCTGTACCCATCTCGTGTGTAATGTGCTGTTTTTGTGTACATACAATAAACAAGTCAGGTCCACAA
>XM_036965101.1
TTAAGTCTACTTTGGGCATAAATGTTTTTCCGTGCCTGGGAATAGACTCAAGATGCCAGGAAGACTGTGGAGCAAGGCCATCTTTGCCGGGTATAAGCGCGGCCTAAGGAACCAGCGGGAGCACACCGCCCTGCTGAAGGTGGAGGGAGTGTACACACGGGAGGAGGTTGACTTCTACCTAGGCAAGCGCTGTGCTTACGTCTACAAGGCTAAGAAGAACACAGTGACTCCTGGTGGCAAGCCCAACAAGACGCGGGTAATCTGGGGCAAAGTCATGCGTGCTCATGGCAACAGTGGAATGGTGCGGGCCAAGTTCAGCAGTAACCTCCCAGCAAAAGCCATGGGACACAGAGTCAGAGTGATGCTGTACCCATCTCGTGTGTAATGTGCTGTTTTTGTGTACATACAATAAACAAGTCAGGTCCACAA
>TU2334614
CGACTACGTACATTTCCCAGCATTCCGTTCCGACTTCCTTTTCCTCCATTTTTCTTACAGTGCAGGTTTTTCCGTGCCTGGGAATAGACTCAAGATGCCAGGAAGACTGTGGAGCAAGGCCATCTTTGCCGGGTATAAGCGCGGCCTAAGGAACCAGCGGGAGCACACCGCCCTGCTGAAGGTGGAGGGAGTGTACACACGGGAGGAGGTTGACTTCTACCTAGGCAAGCGCTGTGCTTACGTCTACAAGGCTAAGAAGAACACAGTGACTCCTGGTGGCAAGCCCAACAAGACGCGGGTAATCTGGGGCAAAGTCATGCGTGCTCATGGCAACAGTGGAATGGTGCGGGCCAAGTTCAGCAGTAACCTCCCAGCAAAAGCCATGGGACACAGAGTCAGAGTGATGCTGTACCCATCTCGTGTGTAATGTGCTGTTTTTGTGTACATACAATAAACAAGTCAGGTCCACAA
>TU2334615
CGACTACGTACATTTCCCAGCATTCCGTTCCGACTTCCTTTTCCTCCATTTTTCTTACAGTGCAGGTGAGAAATATAAAGAGTCAATTTTCTAAAATCGAAATGTCAACGTTATTAAGTCTACTTTGGGCATAAATGTACGTCATTTTAACGATAAATATACTTACGCTTGTCATGTAGTCTGGTTTTTGAGTCCGAGAGGGTGTGATGACAAAGATATAACTTGGATAGTTTTACGAAACTAATGGGCAAGCGCCGGACTGCAGGGATGAGGTTAACGAAATGCATCTCTAGTTAGCCTAAGTATTTCAATGTTAATTAGGATACAACAGTATTCCCTTATTTTGTGTGTTGGTGATTTAACGGACAAACACTACCACTGTGGCTAGTTAGCGACAGCCATCTAGACCCAATGAGATCTCGTCAATGTCTTAGTCTTTAACGtttttgtagctagctaacgtaagaTATGTAGTGTTCTAAGTTATCACGTTCACACCATACTACATTACATTTTTTCTCATTAGGTTTTTCCGTGCCTGGGAATAGACTCAAGATGCCAGGAAGACTGTGGAGCAAGGCCATCTTTGCCGGGTATAAGCGCGGCCTAAGGAACCAGCGGGAGCACACCGCCCTGCTGAAGGTGGAGGGAGTGTACACACGGGAGGAGGTTGACTTCTACCTAGGCAAGCGCTGTGCTTACGTCTACAAGGCTAAGAAGAACACAGTGACTCCTGGTGGCAAGCCCAACAAGACGCGGGTAATCTGGGGCAAAGTCATGCGTGCTCATGGCAACAGTGGAATGGTGCGGGCCAAGTTCAGCAGTAACCTCCCAGCAAAAGCCATGGGACACAGAGTCAGAGTGATGCTGTACCCATCTCGTGTGTAATGTGCTGTTTTTGTGTACATACAATAAACAAGTCAGGTCCACAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587251.2 False 541 mRNA 0.53 5 2670319 2685738
XM_036965101.1 False 429 mRNA 0.52 5 2670502 2685738
TU2334614 False 471 TUCP 0.52 5 2670389 2685738
TU2334615 True 932 TUCP 0.45 4 2670389 2685738

Neighbor

gene id symbol gene type direction distance location
LOC110507330 LOC106580646 coding upstream 19773 2567766 ~ 2650546 (+)
LOC110507331 NA coding upstream 74694 2585011 ~ 2595625 (+)
LOC110507327 LOC106612439 coding upstream 171975 2495659 ~ 2498344 (+)
LOC110507322 LOC106580637 coding upstream 698277 1965604 ~ 1972042 (+)
LOC118944727 NA coding upstream 764629 1892454 ~ 1905690 (+)
abcc5 LOC106580650 coding downstream 2266 2688004 ~ 2752049 (+)
rnpepl1 rnpepl1 coding downstream 78665 2764403 ~ 2799047 (+)
LOC110507256 LOC106612406 coding downstream 122545 2808283 ~ 2810261 (+)
LOC110507334 LOC106612406 coding downstream 127911 2813649 ~ 2815411 (+)
LOC118944765 NA coding downstream 165215 2850953 ~ 2854454 (+)
G2040790 NA non-coding upstream 26927 2553119 ~ 2643392 (+)
G2040774 LOC106580643 non-coding upstream 141349 2528011 ~ 2528970 (+)
G2040768 NA non-coding upstream 150013 2518728 ~ 2520306 (+)
G2040610 NA non-coding upstream 368940 2289651 ~ 2301379 (+)
G2040607 NA non-coding upstream 375532 2286389 ~ 2294787 (+)
G2040842 NA non-coding downstream 36549 2722287 ~ 2740038 (+)
G2040761 NA non-coding downstream 57204 2742942 ~ 2743297 (+)
G2040865 NA non-coding downstream 116664 2802402 ~ 2802622 (+)
G2040874 NA non-coding downstream 125773 2811511 ~ 2812731 (+)
G2040877 NA non-coding downstream 130104 2815842 ~ 2890204 (+)
G2040773 LOC106580643 other upstream 127970 2533894 ~ 2542349 (+)
G2040180 atg16l1 other upstream 1014983 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1171754 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1851851 817321 ~ 831714 (+)
G2040863 NA other downstream 114043 2799781 ~ 2802001 (+)
G2040882 NA other downstream 148358 2834096 ~ 2838927 (+)
G2043193 NA other downstream 1719720 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 2000147 4685868 ~ 4692872 (+)

Expression


Co-expression Network