rnpepl1 (rnpepl1)


Basic Information

Item Value
gene id rnpepl1
gene name rnpepl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2764403 ~ 2799047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587254.2
ATTCCGGTCGGGAACACCCCTCCCCCCGCAAACCGCTGAGCGCAAGCCAAGGACACCAACAACATATCCAGGGCAACGAGGAAACAATTACGAATAAAGGTTATCCATTGTAACTACTCTCAGGGGATGGTGGTTTCCGGCTTTGCAAACGGATACCCATTGATACAAAGTATCACATTTACACTATGGCCGTCTACCTTTCTCTGCCATGAGTGTGAAATATGTATCAGTTTCCTGCATAATGCATGTCACTGGTGCAACGCCAATTTGTTTTCCATTCAATGACTATTCGCTCCGTGGAATATGCGTTTTGTTAACGTCGAGTTAGAGCTGATGCTAAGGCTAATTAGGCTACATGTTGCTATAGGCTATGTTTAGGCTACCTTGCTGAGTGCACTCTCGTCTCTGTAGCGCCCCCCCTACATTCTACAGCTCTAAAACTTTCCTGTCTCAAATATTTCCTCCCTCTTTTTTTTACTTCCTGTTTTCTACGGGAGTCACATAGCCCAAGCTCCTTTCATTTCAACTGTATGTTcaccctttttctttttctttattCGCGCTACATTGTTTCTCACAAGTCTGTCTAACCGGCTCCCAGATTCTTCTCTCTTTGCGTAAGTCGAAGACTTGGAAATGCACAACTCGTTCAACTTCGGTCCCGATGGATTTGACATATTATTTTTGATGTCCTTTTTCTAAAACACTTTTTCTCTACTGTTTTTTTGTTGGTAATGTCACTCTGGAAGTAGTTGCCCATCCAAAGCCACTTTTCTACAAAGTAACATGTCGGCAGCTAGCTCATTAGCTATGTGGCAGCTACTCTGGAGCTGACATATCCAGCTAATTTGCACATTTTATACGCTTCAACTACGGTTGTTGTTCCTTTTTGCGCGTTCATTTATTCCCCCCGGGAAGTTATAATGGCCCAATTCCAGCGTCCGACACTGTGTTGCTGCCGCAAAGTGCTCACAGTGCCTAGCAAGTCGTGTGAGGGCGGCCAAGGTCTGGGTCAGTGTCGCCTCGTCGACATCGCCTCTGCGTCCAACTTCCACTGCTTCAAGCTTCGCCACTTCCATCTCGACCTCCGCCTCAACTTTGCCGTAAAGGAGATCACTGGGTGGCAAGTCCTGGAACTTGTGGCTATCCAACCAGGAGTGCAGACTTTGGTTCTGGACACTCACCCATCCTTGCTAATTCAGTCCATAGACTGCAAGGTGCCTGGCACCACCGGTGCCCAGGACATTTCCCCGTCGCTCGTCTACCGGGTAGACCCATTCACAGACTATGGATCTTCGCTGAATATCAGCCTCCCAGCCTACGTGATACGGCCGCATCGGGCTTTCCAGATCACCGTTCGCTACACAACAACAGACGGTCCTGCGATCTGGTGGCTGGACGCAGAGCTGACGTGTGGTCAGACTCGCCCGCTAGTCTTCACTCAGGGCCACTCTGTCTGCAACCGATCCTTCTTTCCCTGCTTTGACACACCCGCCGTCAAGAGCACCTACACCGCTACTGTCAGGgtgccGGAAGGTGTGACGGTGTTGATGAGTGCCTCCCGCAGTGCCTACTCCAAGCAGGACAGGGTGTTCCAGTTCTCCATGGAGTACCCCGTCCCAGCCTACCTGGTGGCACTGGTGGCAGGAGACCTGCAGCACGTCGACATTGGCCCCAGGAGCCGGGTGTGGGCAGAGCCGTGTGTACTGACCTGTGCTGTGAGCAAGCTAGGGGGTAGCGTGGAGCGTTGGCTGAATGTGGCCGAGGACCTCTTCGGACCCTATGTGTGGGGAAGGTACGACATAGTGTTCCTGCCTCCGTCGTTCCCCATCGTGGCCATGGAGAACCCCTGCCTCACCTTCATCATCTCCTCCATCCTGGAGAGCCGGGAGTTCCTGCTGATCGACGTCATCCACGAGATTGCCCATGGCTGGTTCGGCAACGCGGTCACCAACGCCACCTGGGAAGAGATGTGGCTGAGCGAGGGACTGGCCACCTACGCACAGAGACGCATCACTACCGAGGCCTACGGTGAGGCCTTCACCTGTCTGGAGACGGTGTTCCGTCTAGACGCCCTGCATAGACAGATGCGTCTCCTAGGAGACAACAACCCTGTCAGCAAGCTGCAGGTCAAATTTGAGCCAGGTATTAATCCCAGTAGTCTGATGAACTTGTTCACTTATGAGAAAGGCTTTTGCTTCGTCTCGTACCTCTCTCAACTCTGTGGCAATGTCAAGCGCTTCGACAGCTTCCTGAGGGCCTACATAGAGCAGTTTAAGTTCAGCAGTGTTGTGGCCCAGGACCTGCTCGATTTCTTCTTGTGCTTCTTCCCGGAGCTGAAGGAGAGCTGTGTggcacagagagagggGTTGGAGTTTGAGCGGTGGCTGAACGCTTGTGGCCCCCCTCTGTGCGAACCGGACCTCTCGGCCGGGGGGGTTCTGACCGGTCCCGTCCAGAGTCTGTGTGACCTGTGGGCCAGCGAACCCCCGGACCCTGAGGCCATCGCAAACTTTAACCTCTCCTCTTGGAGCACCTTCCAGACCGTTCTCTTCCTGGACAGACTGTTGGACCGCTCGCCCCTCTCACACGaggtTATGGGTCAGTTGTCACGCTGCTACTCGGCCCAGCTGGATGAGATGAACGCTGAGGTGCGGATCCGCTGGCTGCAGATCGTGGTGCGGAACAGCTTCTACCCGGACCTGCCCCGCATCCGCGGCTTCCTGCACAAACACACGTCGAGGATGTACACAGTCCCGTTGTATGAGGACCTTTGTTCCGGGGTGATGAAGTGCTTTGCAGCTGAGGTGTTCTACCAGACACAAGCCCGCCTCCACCCCAACCTCCGACGGACACTCCAGCAGATCCTGTTCCAGACCAGCGCCTTATCCACTCCCACAGGCTCTGTCCCCTCCCTACTACACCCCACCCCTTCGTCACCCAGTCCCACCCCCAGGGACCAACTGGGGCCCGCCGACCCCCCCACGACTGGTACTATCGCACTACGTGACGTCAACGTGTCCGCCTGAGTGGCCggtagaagagaagagagacataCATACACTGTGAGAAAGGGGGGTGGCATGTTGAAAAAGGTGAAGAACTGTAAGTCTTGAAATGACTGCAGTTTCAGCCAGACATCATCTGTGCTTGACTGAGACTGAGGAGTGAGTGACGAAGGACCACCAGGttcatacacatgcacacacagttacacactaATGCAcactgtgtatgtacagtgcattcggaaagtattcagacaccttgactttttccaccttttgttacattacagccttattccaaaattaatt

Function

symbol description
rnpepl1 Predicted to enable metalloaminopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Orthologous to human RNPEPL1 (arginyl aminopeptidase like 1).

NR:

description
aminopeptidase RNPEPL1 isoform X1

GO: NA

KEGG:

id description
K09605 RNPEPL1; arginyl aminopeptidase-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587254.2 True 3317 mRNA 0.53 11 2764403 2799047

Neighbor

gene id symbol gene type direction distance location
abcc5 LOC106580650 coding upstream 12354 2688004 ~ 2752049 (+)
rpl35a LOC106612432 coding upstream 78665 2670319 ~ 2685738 (+)
LOC110507330 LOC106580646 coding upstream 113857 2567766 ~ 2650546 (+)
LOC110507331 NA coding upstream 168778 2585011 ~ 2595625 (+)
LOC110507327 LOC106612439 coding upstream 266059 2495659 ~ 2498344 (+)
LOC110507256 LOC106612406 coding downstream 9236 2808283 ~ 2810261 (+)
LOC110507334 LOC106612406 coding downstream 14602 2813649 ~ 2815411 (+)
LOC118944765 NA coding downstream 51906 2850953 ~ 2854454 (+)
LOC110507335 NA coding downstream 82581 2881628 ~ 2889241 (+)
LOC110507336 LOC106566134 coding downstream 103758 2902805 ~ 2916027 (+)
G2040761 NA non-coding upstream 21106 2742942 ~ 2743297 (+)
G2040842 NA non-coding upstream 24365 2722287 ~ 2740038 (+)
G2040790 NA non-coding upstream 121011 2553119 ~ 2643392 (+)
G2040774 LOC106580643 non-coding upstream 235433 2528011 ~ 2528970 (+)
G2040768 NA non-coding upstream 244097 2518728 ~ 2520306 (+)
G2040865 NA non-coding downstream 3355 2802402 ~ 2802622 (+)
G2040874 NA non-coding downstream 12464 2811511 ~ 2812731 (+)
G2040877 NA non-coding downstream 16795 2815842 ~ 2890204 (+)
G2040899 NA non-coding downstream 49366 2848413 ~ 2848934 (+)
G2040923 NA non-coding downstream 99655 2898702 ~ 2898924 (+)
G2040773 LOC106580643 other upstream 222054 2533894 ~ 2542349 (+)
G2040180 atg16l1 other upstream 1109067 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1265838 1442677 ~ 1498565 (+)
LOC110507300 NA other upstream 1945935 817321 ~ 831714 (+)
G2040863 NA other downstream 734 2799781 ~ 2802001 (+)
G2040882 NA other downstream 35049 2834096 ~ 2838927 (+)
G2043193 NA other downstream 1606411 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1886838 4685868 ~ 4692872 (+)

Expression


Co-expression Network