LOC110507334 (LOC106612406)


Basic Information

Item Value
gene id LOC110507334
gene name LOC106612406
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2813649 ~ 2815411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587257.2
cggaaaagcattttaaaaatctgacttgttggctagattcacaacgagtgtagctttaattcagtaccctgcatgtgtgttttaatgaaagtttgagttttatcgagtactattagcatttggcgTTGCGCACTTCCATTTCCTGTTGGCTAGGTGAGACGCTGGCGTCTCAGTGGCTGTAAGAGGTTAATTGGACTTGGTTGGTAGGATTGCCTgctttctttccctcccttttcTACATCCCccatctctcattccctctcttctccatgtGAATGACATCAACTTTGAGAACATGAGCAATGATGATGCAGTAAGAGTACTGAGGGAGATTGTGCATAAGCCAGGGTAAGGAgcagtctctcacacactgaaACCTACATGCTGATACGTGCTGAGGATCACACATTGCTTctggtatgtttgtgtgtgtgttataaactGTGTTTGCTGTGTGTAATTGTTGAAAGTCCTATAACTCTGACTGTGGCTAAGTGCTGGGATCCTAACCCTCGAGGATGCTTCACACTGCCGAGAAGTGAGTATATTATATATGGATATATTTTCCTCTTGGGAAGATCAAATGTCACCTCTAAGATTTGACATTCTTTCATTTGCTTTCATTGGGGAGGAAATCGATGTAAATGTGTTTCAGCATTACTTAGTCTTCAAGATAGATCATGTTCCACAGAGGCGATACACCCCTTTCTCTGTGTAGCCGATCCGTCCCATAGACCCTGCTGCCTGGGTGTCCCACACTGCAGCAATGACAGGGGCGTACCCAGTGTACGGTATGAGTCCTTCTATGAGCACCATCCCCTCCACCAGCTCCTCCATCACAAGCCCCATCCCTGAGACTGAGCGGTTTGATGACTTTCATCTATCCATTCACAGCGACATGGCAACAATCGCCAAAGTGATGGCCAATCCAGAGTCTGGTCTGGAGGTGCGAGACAGGATGAGGCTCAAGATCACAATCCCCTCCGCCTTCATAGGATCGAATGTGGTGGACTGGCTCTATCATCACATGGAGGGCTTCACTGACCGTCGTGAGGCCAGGAAGTACGCCAGCAACCTGCtggtattttccaccataatttgcaaataaattcattaaaaatcc
>TU2334764
GGAGGAAATCGATGTAAATGTGTTTCAGCATTACTTAGTCTTCAAGATAGATCATGTTCCACAGAGGCGATACACCCCTTTCTCTGTGTAGCCGATCCGTCCCATAGACCCTGCTGCCTGGGTGTCCCACACTGCAGCAATGACAGGGGCGTACCCAGTGTACGGTATGAGTCCTTCTATGAGCACCATCCCCTCCACCAGCTCCTCCATCACAAGCCCCATCCCTGAGACTGAGCGGTTTGATGACTTTCATCTATCCATTCACAGCGACATGGCAACAATCGCCAAAGTGATGGCCAATCCAGAGTCTGGTCTGGAGGTGCGAGACAGGATGAGGCTCAAGATCACAATCCCCTCCGCCTTCATAGGATCGAATGTGGTGGACTGGCTCTATCATCACATGGAGGGCTTCACTGACCGTCGTGA
>TU2334765
GGAGGAAATCGATGTAAATGTGTTTCAGCATTACTTAGTCTTCAAGATAGATCATGTTCCACAGAGGCGATACACCCCTTTCTCTGTGTAGCCGATCCGTCCCATAGACCCTGCTGCCTGGGTGTCCCACACTGCAGCAATGACAGGGGCGTACCCAGTGTACGGGTTTGATGACTTTCATCTATCCATTCACAGCGACATGGCAACAATCGCCAAAGTGATGGCCAATCCAGAGTCTGGTCTGGAGGTGCGAGACAGGATGAGGCTCAAGATCACAATCCCCTCCGCCTTCATAGGATCGAATGTGGTGGACTGGCTCTATCATCACATGGAGGGCTTCACTGACCGTCGTGA

Function

NR:

description
segment polarity protein dishevelled homolog DVL-3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587257.2 False 1123 mRNA 0.46 3 2813649 2815411
TU2334764 False 426 TUCP 0.52 3 2814276 2815341
TU2334765 True 354 TUCP 0.51 3 2814276 2815341

Neighbor

gene id symbol gene type direction distance location
LOC110507256 LOC106612406 coding upstream 3388 2808283 ~ 2810261 (+)
rnpepl1 rnpepl1 coding upstream 14602 2764403 ~ 2799047 (+)
abcc5 LOC106580650 coding upstream 61600 2688004 ~ 2752049 (+)
rpl35a LOC106612432 coding upstream 127911 2670319 ~ 2685738 (+)
LOC110507330 LOC106580646 coding upstream 163103 2567766 ~ 2650546 (+)
LOC118944765 NA coding downstream 35542 2850953 ~ 2854454 (+)
LOC110507335 NA coding downstream 66217 2881628 ~ 2889241 (+)
LOC110507336 LOC106566134 coding downstream 87394 2902805 ~ 2916027 (+)
ano7 LOC106580699 coding downstream 165602 2981013 ~ 3029319 (+)
LOC118944768 NA coding downstream 229134 3044545 ~ 3046330 (+)
G2040874 NA non-coding upstream 918 2811511 ~ 2812731 (+)
G2040865 NA non-coding upstream 11027 2802402 ~ 2802622 (+)
G2040761 NA non-coding upstream 70352 2742942 ~ 2743297 (+)
G2040842 NA non-coding upstream 73611 2722287 ~ 2740038 (+)
G2040790 NA non-coding upstream 170257 2553119 ~ 2643392 (+)
G2040877 NA non-coding downstream 431 2815842 ~ 2890204 (+)
G2040899 NA non-coding downstream 33002 2848413 ~ 2848934 (+)
G2040923 NA non-coding downstream 83291 2898702 ~ 2898924 (+)
G2040927 NA non-coding downstream 91406 2906817 ~ 2907037 (+)
G2040863 NA other upstream 11648 2799781 ~ 2802001 (+)
G2040773 LOC106580643 other upstream 271300 2533894 ~ 2542349 (+)
G2040180 atg16l1 other upstream 1158313 1652840 ~ 1655336 (+)
G2040080 NA other upstream 1315084 1442677 ~ 1498565 (+)
G2040882 NA other downstream 18685 2834096 ~ 2838927 (+)
G2043193 NA other downstream 1590047 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1870474 4685868 ~ 4692872 (+)
LOC110507397 sfr16 other downstream 3076436 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 3082106 5897208 ~ 5910058 (+)

Expression


Co-expression Network