LOC118944765


Basic Information

Item Value
gene id LOC118944765
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2850953 ~ 2854454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040059.1
GTTCCGGCGACGCTGccagtgtgacgtataatctagtggacgggacgctacttcaacaacaacagctagtcAGACACCTCGGTAGCATCCAAGCCGAAACATTCAAGCTGTTCAGACTGCTTCGGTGTATATTTGCCTCTGTATTTGAAACATAATTATGTATTTCAACTAGTTTCCCCTTGATAAATTAGCTTTtcactaggctagtcgctaacTAGCTAGGTTAGCAGGCTAACATCACTGACCCTGAGTTCACCAAGCTACTCTCCTCCTGCTGAAGAACAGGAgatctgctggacggagaaagaaggtATTtggctgaacattgtcgtgaaagaggagAATGAAggggaggatgttacagtaaacgaagaagtagagggtgaggctgttacagAGAGACAAAAGAAGAAGactcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagagggaggaggatgctGTTTTTGGAGTGAAGGAGATAACTGTCACAttgaaggaggagaaggaagaacaAGAATAGGAGGAGGAGACATGCGATCTGATTAAGACcagagagagaccagactctgACAGCGGGAAGAGTTCCTCAGAGGAAACAGACCCGGAGACGCCTAACCAACACCACTGgtcccactgtggaaagagttttaggtGGTATGGGAGCCTGAAAATTCAAGAGAGAATACATCCAGGCGAAAAGCCCTACCActgttcccactgtggaaagaaTTTTACTCAGTTTGGGGCCCTGGTtgggcatgagagaacacacacaggagagaagccttatcactgctcccactgtggaaagagttttaggtGTTTAGAGAACAACTTCAAGaaaacagctagctacatttagaagtgttgcattttgattgAAGTGGGTCACCAACATGGTAAGTGTAACACAACTCTATTTGTGTTAGTCACTTTTTGCTAAATCTCATAAATAGTActctttcaattcagagcctggattttccCCCTGAGGCTTATATCACGCTGAAATCAATTGAATGGGGAAAACCTTTAGGGTTCTACATTGTGAAATTACTTAAAATACTCCTACttcaatgttaaaacattctacattgtgacactAATTCATTGATATCACGAAATAACTCCTTCATGtactgaccacagctataaggtttctctcctgtgtgtgttctctggtgaattttaatgcctgatgaggtgaatctcttcccacagtcagagcagcagtgagttcTCTTCCCTGTGGATCTCTGCAGGTGtttgaggtgttctgatctggagagactcttctctgcctcttcaGCATCATgtggttgttgaggctccccagaggatccacaatAGTCCCgtatctctcctgtgtgaacaacaaagtcagacagatgacTAAAGGCCCACATCCATTGTAAAAGGTGATGCAAACAGCGTGGCCATGAAGTTGTACAGCAATTGACGTCTGTAATCAATGTTAACATTATTTGACAATTGTCTTAAAATGAGCAAGAAAagtcatattttgtcttgttttcacattagtagtaacatcgatGATTGTCGGCTAGAAATAGGATATTCATGTTGTTGAAACTCTAAACAGCGTGCCAGACGACTTTGGTCTCCAAGGCCCCCTTCTGTGTTTGCTAAAATTGCGGCACGAGGGCAATTTGATTACAGAAACTCCTACCTGCTAATGAGGAAGCCGATAGTTATGGATGTACTATATCTGCCTGGAGCAAAAATGGTGAGCAAAgattttagtttttcacaatgtattctgaatgtgaatgggggaaaactcaggggagtaacctccatttccaggttgcttatgagtgcatttcacactactttggattataattgtaaggcTCATTTGAATGTCCTGTTTAATATAATGTTTGCTACAGTATGAATTAtgtgtaattattgaagaaccgcgTTAATGACAGTATCCATTTAGGTGTTATCAATAAAGTTaagatttaattttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040059.1 True 2022 mRNA 0.42 2 2850953 2854454

Neighbor

gene id symbol gene type direction distance location
LOC110507334 LOC106612406 coding upstream 35542 2813649 ~ 2815411 (+)
LOC110507256 LOC106612406 coding upstream 40692 2808283 ~ 2810261 (+)
rnpepl1 rnpepl1 coding upstream 51906 2764403 ~ 2799047 (+)
abcc5 LOC106580650 coding upstream 98904 2688004 ~ 2752049 (+)
rpl35a LOC106612432 coding upstream 165215 2670319 ~ 2685738 (+)
LOC110507335 NA coding downstream 27174 2881628 ~ 2889241 (+)
LOC110507336 LOC106566134 coding downstream 48351 2902805 ~ 2916027 (+)
ano7 LOC106580699 coding downstream 126559 2981013 ~ 3029319 (+)
LOC118944768 NA coding downstream 190091 3044545 ~ 3046330 (+)
rnf168 LOC106580664 coding downstream 210448 3064902 ~ 3073180 (+)
G2040899 NA non-coding upstream 2019 2848413 ~ 2848934 (+)
G2040874 NA non-coding upstream 38222 2811511 ~ 2812731 (+)
G2040865 NA non-coding upstream 48331 2802402 ~ 2802622 (+)
G2040761 NA non-coding upstream 107656 2742942 ~ 2743297 (+)
G2040842 NA non-coding upstream 110915 2722287 ~ 2740038 (+)
G2040923 NA non-coding downstream 44248 2898702 ~ 2898924 (+)
G2040927 NA non-coding downstream 52363 2906817 ~ 2907037 (+)
G2040928 NA non-coding downstream 52941 2907395 ~ 2908036 (+)
G2040929 LOC100136012 non-coding downstream 53686 2908140 ~ 2908375 (+)
G2040882 NA other upstream 12026 2834096 ~ 2838927 (+)
G2040863 NA other upstream 48952 2799781 ~ 2802001 (+)
G2040773 LOC106580643 other upstream 308604 2533894 ~ 2542349 (+)
G2043193 NA other downstream 1551004 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1831431 4685868 ~ 4692872 (+)
LOC110507397 sfr16 other downstream 3037393 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 3043063 5897208 ~ 5910058 (+)
G2045522 NA other downstream 3640379 6494833 ~ 6495134 (+)

Expression


Co-expression Network