LOC110507336 (LOC106566134)


Basic Information

Item Value
gene id LOC110507336
gene name LOC106566134
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2902805 ~ 2916027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587259.2
TAAGTAGTTGCTTATTTTGATAACTAGTTATTTGACTGAATCAGGAATACAGATGTGGAGTAGATGTAGAGTTTGTTTTAAAATCTCATTACAAATCTGAACTATTCAAACAACACTTGTTGCTCTTTGTACGTGTTGatataatattaatatttaaTGGAGAGGAAAAAAACGTTTCCCTAAACTGCTTTATAGTATTATAATTCATTGAAGGAAAAAAAAGGTTTTCCCTGCGTTTACTCCTTCCAGACAGCAGATGGCGATATGTGTCTTTCAGGTGATGTTTCTACTGTGACGTATAATTtagtggacggaacgcttcttcAACACCTGCAGCCACCTCTGTATCTCGCTAGACAACAAAGTCGGAACATTCAAGATCTTTAGACAATTTCGTGGTTTATTTGCCACTATGATTTAAACATACGTATGTGGAAACAACTAGCTACCTCATTTAATTTTATATTTACGTTGTGTCAATTAGCTGGCTGGTTAAATTAGCACTAgtctagtcgctaatgctaatTAGCTATTATCCAcgaccatgagttcactaaactactctcctgataaagaagaggacgtctgctggacggagaaagaagctctcgtcaaagaggaggaggaagaggaggctgttacaatACAAAATCAAGTAGAGGGTGGGGCTGTTaccgtgaaagaagaagagaaagatgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagaaagaggaggaagccGTTTTTGGAGTGGAGGAGGTTACTGTGACCGTGAAAGAAGATGACCACGTTTTTTTAATGAAGGATGAAGAgggggagattactgtcacattagaggaggaagaagaagagaagactggagatctgattaacaccagtaaatacagagagagaccagaccctccTTCTGACAGCAGGAAGAGTCCTTCAGGGGAACCAGACCCTGAGACGTCTAAACCAGCAGGACGAcatcactgctcccagtgtggaaagagttttactcagttagggagcctgaaaacacataatagaatacacacagaagagaagccttaccactgctccttGTGCGGAAAGAGTTTTAGGTGGTTAGGGAGCGTCGAaaggcatgagaggacacacacaggagaaaagcctttccaatgttcccattgtggaaagagttGTACCCAGTTAGGGAGCCTGAAGgagcacgagagaatacacacaggagaaaagccttaccaatGTTCCCATTGTGGAAAGCATTTTGCCCAGTTAGGAAACCTGAACcagcatgagaggacacacacagcaaaaaagacgtaccactgctcccactgtggaaagagatTTACCCGGTTAAGGTACCTGAAAGAGCATGAAAgaatacatacaaatacacaggaggagaagacataccactgctctcattgtggaaagacattttcccagtcagaggacCTGAAATCACACGAGAGAATCGAGAGGCTGTGTTCTGACTTGTGTTTTTGACTGagaatgtgtgtttttgtttgggcTGTCAGACTTGAGATAACTTTGTAATGTTAGTGCATCCATTGTCTGAAAGCGTTGAAAATACACTGAAAGCATCCAAAATGCATACTATATACCGCTAAAATCTACAATGCCATGTAAAAACAAGATGACATGGAGGTTAAATAAAGTGTGCTTTATCAATGTAACATATTGTGACCccgtccactgtggggctctgtagagtcataatatccataacaactacaggtcaaacagggaaatggttccaatcctTTTTCCAACATTAATTTTTCCCACAGGGCTGTGTTTTGTTTAGGCTCACCCTggtgtgatgttttgataaccatgtaaatctctctaagACAAGGTGACTGAGGGCATACcgtgtgttgtgaatgtattgtaatgtttttaatattgtataactgcctttatTTTGCTGGACccagggtgggtataatttgtggaacgttccaacaggaatccgTTCCAAAAACTTAGTAAataacaaggttgccaacaaacaacgcatacagAGTCGTATAACAGTAGAATGAGATACCGAATAGGGAGTGAGCTATGTAATTACGTTTTTTCACTCACCACGTTTATTCTGAAAAAATGTATCGTCGTTCTGGTGGCCTCCACCATTTCTCATTCGTTGGTTTAGTTATTATTTCCGGTGTTCCTGCATTTGCCGGTGAACTCTGTTGCGCCTCAATTGGGGAATCGCTGTGGTTGAAATGTAACTGATGACCGCAAGCCCCAGTATTTTATTAGCTAGGTGGCTTGTACACAATTGTTACCGATGATTCTGTATATACCTACTCGTACTGCAGAAACATACATTGTATTTTGCCAAGTTCTCTCTGTGTTAATCCTGTTTCCCAAATATAGCAGGTAACTTGTGTCGATGTTGTTGAGTtcatcttgcctagttaaataaagattaaa
>TU2334773
GCTAGACAACAAAGTCGGAACATTCAAGATCTTTAGACAATTTCGTGGTTTATTTGCCACTATGATTTAAACATACGTATGTGGAAACAACTAGCTACCTCATTTAATTTTATATTTACGTTGTGTCAATTAGCTGGCTGGTTAAATTAGCACTAgtctagtcgctaatgctaatTAGCTATTATCCAcgaccatgagttcactaaactactctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587259.2 False 2479 mRNA 0.41 2 2902805 2916027
TU2334773 True 216 lncRNA 0.36 1 2903156 2903371

Neighbor

gene id symbol gene type direction distance location
LOC110507335 NA coding upstream 13564 2881628 ~ 2889241 (+)
LOC118944765 NA coding upstream 48351 2850953 ~ 2854454 (+)
LOC110507334 LOC106612406 coding upstream 87394 2813649 ~ 2815411 (+)
LOC110507256 LOC106612406 coding upstream 92544 2808283 ~ 2810261 (+)
rnpepl1 rnpepl1 coding upstream 103758 2764403 ~ 2799047 (+)
ano7 LOC106580699 coding downstream 64986 2981013 ~ 3029319 (+)
LOC118944768 NA coding downstream 128518 3044545 ~ 3046330 (+)
rnf168 LOC106580664 coding downstream 148875 3064902 ~ 3073180 (+)
LOC110507257 LOC106580698 coding downstream 167678 3083705 ~ 3085115 (+)
LOC110507341 LOC106580714 coding downstream 191424 3107451 ~ 3113758 (+)
G2040923 NA non-coding upstream 3881 2898702 ~ 2898924 (+)
G2040877 NA non-coding upstream 12601 2815842 ~ 2890204 (+)
G2040899 NA non-coding upstream 53871 2848413 ~ 2848934 (+)
G2040874 NA non-coding upstream 90074 2811511 ~ 2812731 (+)
G2040865 NA non-coding upstream 100183 2802402 ~ 2802622 (+)
G2040935 NA non-coding downstream 399 2916426 ~ 2916722 (+)
G2040934 NA non-coding downstream 1214 2917241 ~ 2917459 (+)
G2040936 NA non-coding downstream 2274 2918301 ~ 2918593 (+)
G2040938 NA non-coding downstream 3853 2919880 ~ 2920111 (+)
G2040939 NA non-coding downstream 4907 2920934 ~ 2921784 (+)
G2040882 NA other upstream 63878 2834096 ~ 2838927 (+)
G2040863 NA other upstream 100804 2799781 ~ 2802001 (+)
rpl35a LOC106612432 other upstream 217067 2670319 ~ 2685738 (+)
G2040773 LOC106580643 other upstream 360456 2533894 ~ 2542349 (+)
G2043193 NA other downstream 1489431 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1769858 4685868 ~ 4692872 (+)
LOC110507397 sfr16 other downstream 2975820 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 2981490 5897208 ~ 5910058 (+)
G2045522 NA other downstream 3578806 6494833 ~ 6495134 (+)
G2040927 NA non-coding downstream 3446 2906817 ~ 2907037 (+)
G2040928 NA non-coding downstream 4024 2907395 ~ 2908036 (+)
G2040929 LOC100136012 non-coding downstream 4769 2908140 ~ 2908375 (+)
G2040930 NA non-coding downstream 5122 2908493 ~ 2908718 (+)
G2040933 NA non-coding downstream 7866 2911237 ~ 2913371 (+)

Expression


Co-expression Network