LOC118944768


Basic Information

Item Value
gene id LOC118944768
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3044545 ~ 3046330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040066.1
agaaaataaaggctctctatggtcaggacgtgacaggttatggtgtgtaggggttacCGACCGACCATCATCAACATCGCTGACTTCAGAGTCAAAAGTCAGACTGAACCGAGGAGACAACGAGAGTCAATGGCGCTTGAGTTCCACCTCATTTAGATAGACTGAAGTTGACATAGCTAATGTTTGCTGTCCATGTGACCGAAGTGAAGAACAGCTACTGCTGGGAGAGGGAAGGATTGGAGAGATGCCTGCAACACAGTGAGGCCCATGGATGCAGTAATGAAACCCTGGCCACTGATAGGCATCCAAGTGTGAGGGTGCACTCGAGGGACTCACATGCTGATGTCTGGCATGAGTATTACCAGTGACACATTGCCAAAGGTGTGAGGAAACAGCTGGTGGCCATCGGGAAGCCAGAGGTACTGTCATATTTCATAGTAAAATCAGAACTATGGTTTGTGCAACCTATATCTGGCTCTAGAACCATCCCAATGGACTCTCCTGAATGCCCAAAGAGATTGAGTGGCGGTCACTTTGGGTATGTTCCGAAAATGGAGAAGGAGCAGGCCATTCAACAGCGAAttgaaaaatacacacacacacatccataaagGAAATCAGAGTGGACTGTTTTTCCACTGATATTTTTACCCGTTTCAACGAGCGTGCTAcattgtcccagacctgctgttttgacTCTCTCTCATACCTGCTGTCTCCACCTATGAATGCTCAGATATGAGAAGCCAATTGACATTTGCTCCTGGGGTGTTGTAACTTtttaaagtggcaatcagcagtagaaacaataaaagtgtcctcccttctcctcttttggtaaaaagctgagggatggggctggagaaatgtaaccactttcaAATTCATAGAGCTATAGAATCCAttatatcaaaatgatagttttaaccatgttttgaggctgtaaTGTGTTTGCTGACATTTTCTTTGTTAACAAACGGATTAgaacaagcttatatttggggtttTGATCGGGTCCGAcatttgaactaagctcatgaggcatttctaagttatattcttcaagaatcaatggttgCATATCATTCATATATAAGTGCAAAAATTGATGTAgaaactgctgattgccccttcaAGGTATGCTACTGTTGTTTTTCTACTGATCTTGTGCATGATGCAAAGACTTCCAATCACAAGCCTTTCATGTGAATCCTTTTGTTTCGTTGGAACTTGTAAAAACACCTTAATAACATTGACAGTATTTTTGTAATCCTGTTTCTATGATCTGTTTCCACTACCATGTAGCCAGGTCGCTTTGGGTAaaggcatctgctaaatggcatatattattaaagTCTC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106565277 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040066.1 True 1359 mRNA 0.42 3 3044545 3046330

Neighbor

gene id symbol gene type direction distance location
ano7 LOC106580699 coding upstream 15226 2981013 ~ 3029319 (+)
LOC110507336 LOC106566134 coding upstream 128518 2902805 ~ 2916027 (+)
LOC110507335 NA coding upstream 155304 2881628 ~ 2889241 (+)
LOC118944765 NA coding upstream 190091 2850953 ~ 2854454 (+)
LOC110507334 LOC106612406 coding upstream 229134 2813649 ~ 2815411 (+)
rnf168 LOC106580664 coding downstream 18572 3064902 ~ 3073180 (+)
LOC110507257 LOC106580698 coding downstream 37375 3083705 ~ 3085115 (+)
LOC110507341 LOC106580714 coding downstream 61121 3107451 ~ 3113758 (+)
LOC110507342 gpr171 coding downstream 73483 3119813 ~ 3125427 (+)
LOC110507044 gpr171 coding downstream 83578 3129908 ~ 3139628 (+)
G2041963 NA non-coding upstream 12411 3031894 ~ 3032134 (+)
G2040961 NA non-coding upstream 87883 2956440 ~ 2956662 (+)
G2040960 NA non-coding upstream 88759 2955575 ~ 2955786 (+)
G2040952 NA non-coding upstream 110020 2934219 ~ 2934525 (+)
G2040950 NA non-coding upstream 111196 2933053 ~ 2933349 (+)
G2042038 NA non-coding downstream 42122 3088452 ~ 3130592 (+)
G2042133 NA non-coding downstream 168569 3214899 ~ 3215801 (+)
G2042105 NA non-coding downstream 178095 3224425 ~ 3225239 (+)
G2042136 LOC106600457 non-coding downstream 183823 3230153 ~ 3230442 (+)
G2042138 NA non-coding downstream 186798 3233128 ~ 3233789 (+)
G2040882 NA other upstream 205618 2834096 ~ 2838927 (+)
G2040863 NA other upstream 242544 2799781 ~ 2802001 (+)
rpl35a LOC106612432 other upstream 358807 2670319 ~ 2685738 (+)
G2040773 LOC106580643 other upstream 502196 2533894 ~ 2542349 (+)
G2043193 NA other downstream 1359128 4405458 ~ 4406126 (+)
LOC110507374 spa17 other downstream 1639555 4685868 ~ 4692872 (+)
LOC110507397 sfr16 other downstream 2845517 5874691 ~ 5896127 (+)
LOC110507398 znf296 other downstream 2851187 5897208 ~ 5910058 (+)
G2045522 NA other downstream 3448503 6494833 ~ 6495134 (+)

Expression


Co-expression Network