LOC110507348 (LOC106580655)


Basic Information

Item Value
gene id LOC110507348
gene name LOC106580655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3282492 ~ 3308039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587279.2
CTCGACTGACGTGCCCGAACTTGTACGACCGACACCTGATCCGTTCGGTCGCTGCATAGACCAGGCAGGGAAGTATCAAAGTTACCCAATAAACATACAAATGCGACGCAATTAACCAAGGACTCGGTTGAAAAGTAAGAGTTTACAATTATATCAAAGGAGAATAGCGCGGAATGCTGAGAATGACACGAGTTTGATGGGACATGAGTATTTGGAGCTCCATGCCCAAATGGCAAATTCTCCGCAGAGCTGTTCAAATGTGGTTTTCACGTTGTGATACGCACCGCGTTCTGGTTCAGAACTCATGCTTTCTGCATGAAAACACCTGAATAAGGTAGCCTATCCAAGATGATCAACCTCTTTTATACCAATCCTTGCATTTAGCAGAATCATGTGCTCTCGACATTGAGTGTAGGTTACCATTGACTGTCAACTGTAAAACACGACTACAGGTTACAATGGAGCACAGGAAGCAGAAGTTGAGTTCGGCCAAGGGCATCGTCCCAGTGTTTGAGATGCGCGGAACTCGTCGGATACTTTTTCTACTAGTGCTGATGTTGGTAGGTTTGGATGGGTTCGGCGGACTCCCTACGTGTAGAAGGAAAACGgaAGCTGGTGAGCGGTCTGTGGAGTCCCTGAGCTCTGTGAAGCATCATCCCGTGACGGCGGCGGCATTGAGCCGCTCCAAACGCTACGCCATCAACCCACTGGGACACAAGTGGAAGCATTTCAACCTCACCTACAAGATCGTGAAGTTTCCCAACACACTGAACAAAGACGGCACCCGCAAGGCCATCAGCATTGCGTTCTCCAAGTGGAGCGACGTGTCCCCTCTCTACTTTGCTGAAATCACAAACCCCAACAAGAGTGCTGACATTATCATCGGCTTCTACACGTGGAACCACACAGACTGCTGGTGGTCTCCATTGCACCCCTGTTTTGATGGGCTAAACGGGGAGTTGGCCCATGCCTTCCTGCCCCCGCGCGGGGAGATCCACTTTGACAACCATGAGTTCTGGATCCTGGGGAAGTCCCGCTTCAGCTGGAAACAAGGTGTATGGTTGAATGACCTGGTACAGGTTGCGGCTCATGAGATCGGGCACGCCCTGGGACTGTGGCACTCCCGTGACCCCCAGGCCCTGATGCACCCCAATGCCACCTACACGGGACAGAGGAACATTGCCCAGGACGACATCTGGGGAATCCAGCGCCTCTATGGATGCACAGACAAGAAGCGCGTGTGTGATCCATGGGCTCGCCTTGGCTTCTGCGAAAGGAGGAAGAGCTTCATGAAGAAACACTGTGCCCGCCGCTGCGACCTCTGCTATGAGCCTCTTGAGGCCGTTACCACACCAACTCCACTGCCTTCCAACGTCAAGGTCAAGATGGTTCCTCGTGGAAAGGTTGTGGGCTTCCGCTGTGGGACGAAGAATCCTAGATCGCCTCCCAAAGTCAGCTGGTACAAGGATGGAGAACAGCTCCTGATCTCTATCCCCGGCTACATCATCATGAAGGGCCGCGACCTCCGCATCGTTGCCAACGAGTTTAACGAGGGCACTTACACCTGTCGCGTCCATCGTAGCGGCAATGTGGTCTCTGCAAACTCCTGGGCCATCCGGCTGAAGCCTGAACAGCCCTCCAACAGTTGAGCTGAACGGAGTGAGTGAGGGAAGGGAAGAATGAGAGCTGGGAAGGAAAGTATAAGGCATGGAGGAAAAGAGGACGAACCCACAGCTGTGCCACATGTGCCTCTCCGCTAGCCGCAGTGGAATGCAGGTGGCAACAATTATAATATTAAAATGGAACTCAGCAATTTGACATCATACACCATGACGACTTCCTGATATTTAAAATCTGCCAAGACTGCCACATATTGGACCATATTCACTCAGGGGTCGTGAGCTCtggttcagaggggttgggttaaatgcggaagacacatttcagttgaagacattcagttgtacaactgactacggtaggtatccccctttccctaaaaTAAAAACCcccaacagaaaacagaaaacctTCCTTGAGTTTAACCTTAGAATCAACAGATAATTTACCAATGGAAACAACCCTCTAGTCTAGAGCCAATAGTGTCAGTCTTGGCAGATTGAAATTCTGTTGTTGTTAATGTCTGTAAACAGGAAGTTTCCCCGGTTTGTAGGATGATATCATatagctgagtctacctttaagcaGGCTGTACTCTGACAGTACTCCCCAGGTCATAAATGGGATAGACCCCAGCGCTCAGCCTTATACTTCATtcatcatcaaggacatcagacTTTAAGATCCAGACAGAAAAGACTAGCTTTGCTCACCCTTTAAATGTGATGACTGTCATTTCCATTCAGTTGTTGTATTGATATATCTCACTTTGTAAAATGTCTAGGACA
>XM_021587280.2
CTCGACTGACGTGCCCGAACTTGTACGACCGACACCTGATCCGTTCGGTCGCTGCATAGACCAGGCAGGGAAGTATCAAAGTTACCCAATAAACATACAAATGCGACGCAATTAACCAAGGACTCGGTTGAAAAGTAAGAGTTTACAATTATATCAAAGGAGAATAGCGCGGAATGCTGAGAATGACACGAGTTTGATGGGACATGAGTATTTGGAGCTCCATGCCCAAATGGCAAATTCTCCGCAGAGCTGTTCAAATGTGGTTTTCACGTTGTGATACGCACCGCGTTCTGGTTCAGAACTCATGCTTTCTGCATGAAAACACCTGAATAAGGTTACAATGGAGCACAGGAAGCAGAAGTTGAGTTCGGCCAAGGGCATCGTCCCAGTGTTTGAGATGCGCGGAACTCGTCGGATACTTTTTCTACTAGTGCTGATGTTGGTAGGTTTGGATGGGTTCGGCGGACTCCCTACGTGTAGAAGGAAAACGgaAGCTGGTGAGCGGTCTGTGGAGTCCCTGAGCTCTGTGAAGCATCATCCCGTGACGGCGGCGGCATTGAGCCGCTCCAAACGCTACGCCATCAACCCACTGGGACACAAGTGGAAGCATTTCAACCTCACCTACAAGATCGTGAAGTTTCCCAACACACTGAACAAAGACGGCACCCGCAAGGCCATCAGCATTGCGTTCTCCAAGTGGAGCGACGTGTCCCCTCTCTACTTTGCTGAAATCACAAACCCCAACAAGAGTGCTGACATTATCATCGGCTTCTACACGTGGAACCACACAGACTGCTGGTGGTCTCCATTGCACCCCTGTTTTGATGGGCTAAACGGGGAGTTGGCCCATGCCTTCCTGCCCCCGCGCGGGGAGATCCACTTTGACAACCATGAGTTCTGGATCCTGGGGAAGTCCCGCTTCAGCTGGAAACAAGGTGTATGGTTGAATGACCTGGTACAGGTTGCGGCTCATGAGATCGGGCACGCCCTGGGACTGTGGCACTCCCGTGACCCCCAGGCCCTGATGCACCCCAATGCCACCTACACGGGACAGAGGAACATTGCCCAGGACGACATCTGGGGAATCCAGCGCCTCTATGGATGCACAGACAAGAAGCGCGTGTGTGATCCATGGGCTCGCCTTGGCTTCTGCGAAAGGAGGAAGAGCTTCATGAAGAAACACTGTGCCCGCCGCTGCGACCTCTGCTATGAGCCTCTTGAGGCCGTTACCACACCAACTCCACTGCCTTCCAACGTCAAGGTCAAGATGGTTCCTCGTGGAAAGGTTGTGGGCTTCCGCTGTGGGACGAAGAATCCTAGATCGCCTCCCAAAGTCAGCTGGTACAAGGATGGAGAACAGCTCCTGATCTCTATCCCCGGCTACATCATCATGAAGGGCCGCGACCTCCGCATCGTTGCCAACGAGTTTAACGAGGGCACTTACACCTGTCGCGTCCATCGTAGCGGCAATGTGGTCTCTGCAAACTCCTGGGCCATCCGGCTGAAGCCTGAACAGCCCTCCAACAGTTGAGCTGAACGGAGTGAGTGAGGGAAGGGAAGAATGAGAGCTGGGAAGGAAAGTATAAGGCATGGAGGAAAAGAGGACGAACCCACAGCTGTGCCACATGTGCCTCTCCGCTAGCCGCAGTGGAATGCAGGTGGCAACAATTATAATATTAAAATGGAACTCAGCAATTTGACATCATACACCATGACGACTTCCTGATATTTAAAATCTGCCAAGACTGCCACATATTGGACCATATTCACTCAGGGGTCGTGAGCTCtggttcagaggggttgggttaaatgcggaagacacatttcagttgaagacattcagttgtacaactgactacggtaggtatccccctttccctaaaaTAAAAACCcccaacagaaaacagaaaacctTCCTTGAGTTTAACCTTAGAATCAACAGATAATTTACCAATGGAAACAACCCTCTAGTCTAGAGCCAATAGTGTCAGTCTTGGCAGATTGAAATTCTGTTGTTGTTAATGTCTGTAAACAGGAAGTTTCCCCGGTTTGTAGGATGATATCATatagctgagtctacctttaagcaGGCTGTACTCTGACAGTACTCCCCAGGTCATAAATGGGATAGACCCCAGCGCTCAGCCTTATACTTCATtcatcatcaaggacatcagacTTTAAGATCCAGACAGAAAAGACTAGCTTTGCTCACCCTTTAAATGTGATGACTGTCATTTCCATTCAGTTGTTGTATTGATATATCTCACTTTGTAAAATGTCTAGGACA

Function

NR:

description
matrix metalloproteinase-23-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587279.2 False 2408 mRNA 0.50 8 3282492 3308039
XM_021587280.2 True 2290 mRNA 0.50 9 3282492 3308039
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110507346 eif2a coding downstream 27379 3247810 ~ 3255113 (-)
tsen34 tsen34 coding downstream 42259 3237401 ~ 3240233 (-)
LOC118944748 NA coding downstream 320994 2956640 ~ 2961498 (-)
LOC110507338 LOC106603753 coding downstream 325904 2945922 ~ 2956588 (-)
LOC110507043 LOC106603827 coding downstream 341645 2936528 ~ 2940847 (-)
LOC110507349 LOC106580654 coding upstream 7046 3315085 ~ 3349977 (-)
gdpd1 gdpd1 coding upstream 50430 3358469 ~ 3384597 (-)
LOC110507355 LOC104924156 coding upstream 177240 3485279 ~ 3517446 (-)
LOC110507356 LOC106580682 coding upstream 230990 3539029 ~ 3718487 (-)
LOC118944783 LOC106580716 coding upstream 411091 3719130 ~ 3726268 (-)
G2042542 NA non-coding downstream 668 3278882 ~ 3281824 (-)
G2042533 NA non-coding downstream 17368 3264811 ~ 3265124 (-)
G2042287 NA non-coding downstream 35183 3247110 ~ 3247309 (-)
G2042291 NA non-coding downstream 35910 3246293 ~ 3246582 (-)
G2042283 NA non-coding downstream 50216 3232065 ~ 3232276 (-)
G2042552 NA non-coding upstream 4465 3312504 ~ 3313527 (-)
G2042585 NA non-coding upstream 45311 3353350 ~ 3366019 (-)
G2042603 NA non-coding upstream 75733 3383772 ~ 3389518 (-)
G2042657 NA non-coding upstream 210958 3518997 ~ 3519303 (-)
G2042663 NA non-coding upstream 220488 3528527 ~ 3528747 (-)
G2041885 NA other downstream 383104 2898987 ~ 2899388 (-)
G2041883 NA other downstream 386101 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 2511755 769005 ~ 776178 (-)
G2042608 NA other upstream 92540 3400579 ~ 3402997 (-)
G2043460 NA other upstream 1035560 4343599 ~ 4348409 (-)
G2043483 NA other upstream 1070895 4378934 ~ 4379429 (-)
G2043518 NA other upstream 1106026 4414065 ~ 4414423 (-)

Expression

LOC110507348(LOC106580655) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110507348(LOC106580655) Expression in each Bioproject

Bar chart with 18 bars.
LOC110507348(LOC106580655) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network