LOC110507349 (LOC106580654)


Basic Information

Item Value
gene id LOC110507349
gene name LOC106580654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3315085 ~ 3349977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587281.2
CTTGATAAAACAATACGACCGTTGAAATCTATAAATCCAGCAGGGTTAGTAGTTGTGGGTGCTTCACTGCCCTATAATCCGCTTCATTGTCAATTGACAGTGAGTCTCTTCGGAGCTAGGAGCGGTCGACATCTTGAATTGGAGTAAGAAGTCACTCCTCATGGCCTGTTATGACTGAGAGGCTGCCATCATGATTGGAGGATTGTTCATCTACAACCACAAGGGGGAGGTGCTGATCTCCCGCGTCTACCGTGATgacataggGCGCAACGCGGTGGATGCGTTCCGCGTGAACGTGATCCATGCGCGGCAGCAGGTGCGCTCGCCGGTCACCAACATCGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCGGCGGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTCGGCAAGATCAGCGAGGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTGGACGAGATCCTGGACTTTGGCTACCCCCAGAACTCGGAGACTGGCGCACTGAAGACCTTCATCACTCAAACAGGCATCAAGAGCCAGCACCATTCCAAGGAGGAGCAGTCTCAGATCACCAGTCAGGTGACTGGACAGATCGGCTGGCGTCGCGAGGGCATCAAGTACCGTCGCAACGAGCTCTTCCTGGACGTGCTGGAGAGCGTCAACCTGCTGATGTCCCCACAAGGCCAGGTGCTGAGCGCCCACGTCTCGGGCCGCGTGGTGATGAAGAGCTACCTGAGCGGCATGCCGGAGTGCAAATTTGGAATGAACGACAAGATCGTCATCGACAAACAGGGCAAAGGGGGCGCCACCGAGGAGGCGGCGGGCAAGAGTGATTTGGGAGGCAGTGGCGGTGGTGGCGGTAAGCAATCCATAGCCATTGACGACTGTACATTCCACCAGTGTGTGCGTCTCAGCAAGTTTGACGCTGAGCGCAGCATCAGCTTCATTCCTCCGGACGGAGAATGTGAACTCATGAGGTACCGCACCACCAAGGACATCATCCTACCCTTCCGTGTCATCCCCCTTGTCAGGGAGGTGGGCCGCACCAAGCTTGAAGTCAAGGTGGTCATTAAGTCCAACTTCAAGCCCTCGCTTCTGGCTCAGAAGATTGAGGTGCGCATCCCCACCCCTCTCAACACCAGCGGGGTCCAGGTGATCTGCATGAAGGGCAAGGCCAAGTACAAGGCCAGCGAGAACGCCATCGTCTGGAAGATCAAACGTATGGCAGGGATGAAGGAGTCTCAAATCAGTGCTGAGATTGAGCTGCTGCCCACCAACGACAAGAAGAAGTGGGCGCGCCCTCCCATCTCTATGAACTTTGAGGTGCCATTTGCTCCGTCCGGACTCAAGGTGCGCTACCTGAAGGTGTTCGAGCCCAAGCTGAACTACAGTGACCACGACGTCATCAAATGGGTGCGCTATATCGGCCGCAGCGGCATTTACGAGACACGCTGCTAACCGCCACCTCACAATCGGGTGGAAAGAGGGACGCAACAGGGAAGAGGCTGGACCAAGGGAGGGAGCGAAAGATGACAACATGGGGTCGTTTCTTTCAGTCTTTTTTTCCTGACAAacgaaaaaaaatctatatattgaAAATTATTATATTACTAAACGCATATATGTATAAATAATGCAAACATCCTGTGAAGTACAAAAAATACCATCTGCATCTAAAGGCTCTTTTCCCCTTTTTAATCTAAACAAAAAATCCATTCCACCCCCATGATATGTTGTTTACTATTCCTGTACAACCCATCTATTCCCCATGGCACTGAATTAGTGGACAACTATACCCCTTGCCCATAACCACAGATCTAGAATAAGATCACGCACCATACCCTCAATCCTAATGTATTAGGAGGATAAAAAAAAGTATCTGACCATGTATCATTGGCTTAGGAGTAACTGCTACCCTCCCTCTCTTGATGCTGGCATAGGAGTGTGTGTGTCGCTCTTCTGTTCTCCTGTAGCAACTAACGTCTCttgtcccacctctctctccccagccctgccCCTGTATCTATATCTAACCGGTGGAGTCACTCTTTAGCCTAGTGTGTAGTTTTCAGCCGTATGTGGTGTAGATGCATCCGTTAAGTGTCATGCCGTTTTCAGTACATTTGATACGTTTAGTTATTTTAACACCCGGCCTTCCCCGAGTATTTTAGTCATGAATCGTcttgtgtttttgtatttagtGCTTTGTCGTGCTTCTCTAAAGCTCTCTGGCCACCATTCCATCGCGCTGTCTCGCGGTCTTATCCCACACCCTTAGTCCTCCTCTACTATTTCCAATAGCTGGGGGTGTCATTGTTATTATGATTCCTCCTGACGCAGGTATCATTTTGCTGTACTTCCTGTCGTTTTCTGTCTTAAGTGCTGCAGAGATTCCTTCTGTGTGACCAAAATTGTCAGTtttaggaacaacaacaaaaatgtagcGATGACAATAGACGGGACACATCAGTctatgaatataaatatatataaacacatcTCTATATTGTATGAATGGTAAAAATGTGCTATCGAGCAGAGCCAGTTGTTACGGTCTCAATGGTCTGCTGTTAGGGATGGTGTTTGTGTAGGAGACGCAGTTGagcagatctgtgtgtgtgtgtgtgcgtgtgtgcgcgagTGCATTGCTATTCTTCCCCAGGACCACGATCTGCTGAACATGTCTCGGGAGTCTGAAATTCTGGCTGTAAATTCCCAGTTCTGATCCCGACTGGAATGCTGACCCTTCCATACGCTTTACATTAGCATGGGTGTATTTCTTGAccagttaaagggatagttcaacaAATTACAATggcattggtttccttaccctgtaagcagtctatggacaaggtacgACAACaacatgctttggtttagtttccctgtcACTGTTATCACATGCTAATGTTTTatcatttgtggcacaaatcccattcatgTCATGGGACCGATATTAGCATTTGTTGCTCATCATGTTCAAATCAATTTGTGATCCATTTGGACATGATGCATGAAAAACGATAATATTGGTCCCATGACTtcaatgggatttgtgccacaaatgctaaaatgttTGCATGTGGAAACGGTGCCaaggaaactaaaccaaagcatggcttgctgtcataccttgtccaaagactgcttacagggtaaggaaactcATTTGTAACTTGGGTGAACTATTCCTTTAACCTTCAAAAACCCCCTTATATTCCATGTGCACTGATTTCCCCCactcatataaaaaaaaaaattgtttacaaCTTAATTTTGAAATCAGTTTAATGAAGGGATTTGGATATGGaacaatggtgtgtgttaccAGAGAGCGAGAAATGGGTTGCGTCCCAAATAGTACATTACTtttaaggtgccatttgggacagagcttCTGCTAACTTCTGAAAAACTCTATCTCTTTGGCTGGCTGTAATTGCACACTATTCCCAaaatcctatgggccctggccaaaagtagtgcactatataggcaataggttGCCAATTGAGACCTAGTCTCCCTCTCTGGTCAATGCCCACTATGTCATGCCACACCCTGAGGGATGGGTAGGGAGAGTCCTGGGGGCTTGACCCTCTGCTTCAATGTTTCCATGGGATCCATTTGGTAACTATGTGACTGTCAAGGTAATCCCAATAAAAAGGTGTAACCAATGGAA
>XM_021587282.2
CTTGATAAAACAATACGACCGTTGAAATCTATAAATCCAGCAGGGTTAGTAGTTGTGGGTGCTTCACTGCCCTATAATCCGCTTCATTGTCAATTGACAGTGAGTCTCTTCGGAGCTAGGAGCGGTCGACATCTTGAATTGGAGTAAGAAGTCACTCCTCATGGCCTGTTATGACTGAGAGGCTGCCATCATGATTGGAGGATTGTTCATCTACAACCACAAGGGGGAGGTGCTGATCTCCCGCGTCTACCGTGATgacataggGCGCAACGCGGTGGATGCGTTCCGCGTGAACGTGATCCATGCGCGGCAGCAGGTGCGCTCGCCGGTCACCAACATCGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCGGCGGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTCGGCAAGATCAGCGAGGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTGGACGAGATCCTGGACTTTGGCTACCCCCAGAACTCGGAGACTGGCGCACTGAAGACCTTCATCACTCAAACAGGCATCAAGAGCCAGCACCATTCCAAGGAGGAGCAGTCTCAGATCACCAGTCAGGTGACTGGACAGATCGGCTGGCGTCGCGAGGGCATCAAGTACCGTCGCAACGAGCTCTTCCTGGACGTGCTGGAGAGCGTCAACCTGCTGATGTCCCCACAAGGCCAGGTGCTGAGCGCCCACGTCTCGGGCCGCGTGGTGATGAAGAGCTACCTGAGCGGCATGCCGGAGTGCAAATTTGGAATGAACGACAAGATCGTCATCGACAAACAGGGCAAAGGGGGCGCCACCGAGGAGGCGGCGGGCAAGAGTGGCGGTGGTGGCGGTAAGCAATCCATAGCCATTGACGACTGTACATTCCACCAGTGTGTGCGTCTCAGCAAGTTTGACGCTGAGCGCAGCATCAGCTTCATTCCTCCGGACGGAGAATGTGAACTCATGAGGTACCGCACCACCAAGGACATCATCCTACCCTTCCGTGTCATCCCCCTTGTCAGGGAGGTGGGCCGCACCAAGCTTGAAGTCAAGGTGGTCATTAAGTCCAACTTCAAGCCCTCGCTTCTGGCTCAGAAGATTGAGGTGCGCATCCCCACCCCTCTCAACACCAGCGGGGTCCAGGTGATCTGCATGAAGGGCAAGGCCAAGTACAAGGCCAGCGAGAACGCCATCGTCTGGAAGATCAAACGTATGGCAGGGATGAAGGAGTCTCAAATCAGTGCTGAGATTGAGCTGCTGCCCACCAACGACAAGAAGAAGTGGGCGCGCCCTCCCATCTCTATGAACTTTGAGGTGCCATTTGCTCCGTCCGGACTCAAGGTGCGCTACCTGAAGGTGTTCGAGCCCAAGCTGAACTACAGTGACCACGACGTCATCAAATGGGTGCGCTATATCGGCCGCAGCGGCATTTACGAGACACGCTGCTAACCGCCACCTCACAATCGGGTGGAAAGAGGGACGCAACAGGGAAGAGGCTGGACCAAGGGAGGGAGCGAAAGATGACAACATGGGGTCGTTTCTTTCAGTCTTTTTTTCCTGACAAac
>XR_005039962.1
AATGCCATTACAGTACATGCTAGTCTTGATAAAACAATACGACCGTTGAAATCTATAAATCCAGCAGGGTTAGTAGTTGTGGGTGCTTCACTGCCCTATAATCCGCTTCATTGTCAATTGACAGTGAGTCTCTTCGGAGCTAGGAGCGGTCGACATCTTGAATTGGAGTAAGAAGTCACTCCTCATGGCCTGTTATGACTGAGAGGCTGCCATCATGATTGGAGGATTGTTCATCTACAACCACAAGGGGGAGGTGCTGATCTCCCGCGTCTACCGTGATgacataggGCGCAACGCGGTGGATGCGTTCCGCGTGAACGTGATCCATGCGCGGCAGCAGGTGCGCTCGCCGGTCACCAACATCGCCCGCACCAGCTTCTTCCACGTCAAGCGCTCCAACATCTGGCTGGCGGCGGTCACCAAGCAGAATGTCAACGCCGCCATGGTGTTCGAGTTCCTCTACAAGATGTGCGACGTCATGACGGCCTACTTCGGCAAGATCAGCGAGGAGAACATCAAGAACAACTTTGTGCTGATCTACGAGCTGCTGGACGAGATCCTGGACTTTGGCTACCCCCAGAACTCGGAGACTGGCGCACTGAAGACCTTCATCACTCAAACAGGCATCAAGAGCCAGCACCATTCCAAGGAGGAGCAGTCTCAGATCACCAGTCAGGTGACTGGACAGATCGGCTGGCGTCGCGAGGGCATCAAGTACCGTCGCAACGAGCTCTTCCTGGACGTGCTGGAGAGCGTCAACCTGCTGATGTCCCCACAAGGCCAGGTGCTGAGCGCCCACGTCTCGGGCCGCGTGGTGATGAAGAGCTACCTGAGCGGCATGCCGGAGTGCAAATTTGGAATGAACGACAAGATCGTCATCGACAAACAGGGCAAAGGGGGCGCCACCGAGGAGGCGGCGGGCAAGAGTGATTTGGGAGGCAGTGGCGGTGGTGGCGGTAAGCAATCCATAGCCATTGACGACTGTACATTCCACCAGTGTGTGCGTCTCAGCAAGTTTGACGCTGAGCGCAGCATCAGCTTCATTCCTCCGGACGGAGAATGTGAACTCATGAGGTACCGCACCACCAAGGACATCATCCTACCCTTCCGTGTCATCCCCCTTGTCAGGGAGGTGGGCCGCACCAAGCTTGAAGTCAAGGTGGTCATTAAGTCCAACTTCAAGCCCTCGCTTCTGGCTCAGAAGATTGAGGTATGGCTACAGAGGGATATAGGGGTACCAAGTGAGCATAAAGCTTTGGACACAGTACCTGACCAGGTCGTGGTCATCACGGTCAGGTGCGCATCCCCACCCCTCTCAACACCAGCGGGGTCCAGGTGATCTGCATGAAGGGCAAGGCCAAGTACAAGGCCAGCGAGAACGCCATCGTCTGGAAGATCAAACGTATGGCAGGGATGAAGGAGTCTCAAATCAGTGCTGAGATTGAGCTGCTGCCCACCAACGACAAGAAGAAGTGGGCGCGCCCTCCCATCTCTATGAACTTTGAGGTGCCATTTGCTCCGTCCGGACTCAAGGTGCGCTACCTGAAGGTGTTCGAGCCCAAGCTGAACTACAGTGACCACGACGTCATCAAATGGGTGCGCTATATCGGCCGCAGCGGCATTTACGAGACACGCTGCTAACCGCCACCTCACAATCGGGTGGAAAGAGGGACGCAACAGGGAAGAGGCTGGACCAAGGGAGGGAGCGAAAGATGACAACATGGGGTCGTTTCTTTCAGTCTTTTTTTCCTGACAAac

Function

NR:

description
PREDICTED: AP-2 complex subunit mu-B-like isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587281.2 False 3758 mRNA 0.48 14 3315085 3349953
XM_021587282.2 False 1633 mRNA 0.56 13 3317195 3349953
XR_005039962.1 True 1758 mRNA 0.55 14 3317195 3349977
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110507348 LOC106580655 coding downstream 7046 3282492 ~ 3308039 (-)
LOC110507346 eif2a coding downstream 59972 3247810 ~ 3255113 (-)
tsen34 tsen34 coding downstream 74852 3237401 ~ 3240233 (-)
LOC118944748 NA coding downstream 353587 2956640 ~ 2961498 (-)
LOC110507338 LOC106603753 coding downstream 358497 2945922 ~ 2956588 (-)
gdpd1 gdpd1 coding upstream 8492 3358469 ~ 3384597 (-)
LOC110507355 LOC104924156 coding upstream 135302 3485279 ~ 3517446 (-)
LOC110507356 LOC106580682 coding upstream 189052 3539029 ~ 3718487 (-)
LOC118944783 LOC106580716 coding upstream 369153 3719130 ~ 3726268 (-)
LOC110507640 LOC106580716 coding upstream 380000 3729977 ~ 3734931 (-)
G2042552 NA non-coding downstream 1558 3312504 ~ 3313527 (-)
G2042546 NA non-coding downstream 27634 3287215 ~ 3287451 (-)
G2042542 NA non-coding downstream 33261 3278882 ~ 3281824 (-)
G2042533 NA non-coding downstream 49961 3264811 ~ 3265124 (-)
G2042287 NA non-coding downstream 67776 3247110 ~ 3247309 (-)
G2042585 NA non-coding upstream 3373 3353350 ~ 3366019 (-)
G2042603 NA non-coding upstream 33795 3383772 ~ 3389518 (-)
G2042657 NA non-coding upstream 169020 3518997 ~ 3519303 (-)
G2042663 NA non-coding upstream 178550 3528527 ~ 3528747 (-)
G2042669 NA non-coding upstream 186644 3536621 ~ 3537071 (-)
G2041885 NA other downstream 415697 2898987 ~ 2899388 (-)
G2041883 NA other downstream 418694 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 2544348 769005 ~ 776178 (-)
G2042608 NA other upstream 50602 3400579 ~ 3402997 (-)
G2043460 NA other upstream 993622 4343599 ~ 4348409 (-)
G2043483 NA other upstream 1028957 4378934 ~ 4379429 (-)
G2043518 NA other upstream 1064088 4414065 ~ 4414423 (-)

Expression

LOC110507349(LOC106580654) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110507349(LOC106580654) Expression in each Bioproject

Bar chart with 21 bars.
LOC110507349(LOC106580654) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network