LOC110507357 (shox2)


Basic Information

Item Value
gene id LOC110507357
gene name shox2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 3881456 ~ 3889257 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587297.2
ACAGGCGAAGGGAAGGGGGCTCATCCCGGCATCCTGAGGGGAGGTAATTTGCACAGATCAAGGGGCAGGCGTTGCAAAGTATAAATACTGTGACTTCAATAGCGGATCACCAGCAGGTTGGAACTCCGCAGCAAGAAGAATTTGTCGAGATCTTATACATTTAGCTGCAGCACGAGATCCAGAGTTGGCAACAACATCACCTTGCATTTAGGTCGTCTAAAATAAACACTCTTGATGTCTTAAACTGTTgtggaactgagagagagagagaacgagagagcgagagtgagagaccAAGACGAGGAGATTTTTTGGAGCAGTGATGGAAGAACTTACCGCGTTTGTGTCGAAGTCTTTTGATCAgaaagtgaaggaaaagaaggAAGTGATCACGTACAGGGAGGTGCTGGAGACCGGATCCGCGCGAGCCAGGGAGGGTCTCGCCAGCGATCCGAATCGCGAGGAAATGAACGATATCGCTCGGGTAGACGCGCGATCGCCAGGCAGGGAACCGGACATGCTGGGGCCAGAGAGAACCAGGGATGTGGGAAGCCCGAAACTGATCGATGGTACCACGCAcatgaaagagagaaaagaggacaCAAAGCAAATGGAGGACGAGGCACAGACTAAAATCAAGCAGAGGAGAAGTCGGACTAACTTTACACTGGAGCAATTGAACGAGCTAGAGCGGCTTTTCGATGAGACCCACTATCCAGATGCCTTCATGCGGGAGGAGCTGAGCCAGCGGCTAGGGCTGTCCGAGGCTCGAGTACAAGTTTGGTTTCAGAACCGGAGGGCCAAATGCAGAAAGCAGGAGAATCAGTTACACAAAGGAGTTCTCATTGGAGCCGCGAGTCAGTTTGAAGGTTGTCGCGTAGCGCCATATGTCAACGTGGGGGCCTTACGGATGCCATTCCAACAGGATAGTCATTGCAACGTGCCGCCCTTCTCCTTTCAGGTCCAGGCGCAACTGCAGTTGGACAGCGCGGTGGCCCACGCGCACCATCACCTGCACTCTCACCTGGCAGCGCACGCCCCTTACATGATGTTTCCGGGCCCGCCATTTGGTTTGCCCTTGGCTACGCTCGCGGCTGAATCCGCCTCTGCTGCCTCGGTTGTGGCCGCAGCTGCAGCCGCCAAAAACACCAACAAAAACTCCAGTATTGCAGATCTGAGACTCAAGGCCAAAAAACACGCGGCAGCTCTGGGACTGTGACTAGGCGTGCAACAAGGTGTATATGGCGTCTAAAAAGGCCTACATTATTGACTTGAGAGTCATCAACAACGCAGAGGCATCAAAACAAAAAATGCTTTACAAAGTGAAAGCAAGGACatatatgtttttttgtttgttttttaaacgaAGGACATCATGTATAACTATAGAAAATAGGCTATTTATGAGATAAAAACAAAGATAGACTGTGAAATCGATAATAAAGGGCGGGAGTTGATATAGGCTACGTCTTCACAAATGCCACGTGGTAACTGCACCAACGTGAAACTAGGGTGGAGGTGTCAACGAGCAAGATTTCCAAGAGGAACGATGCCGCATGGGACGTTCGACTCTTTGTGAAACAAGGAGAACTATTCTGCGTTGTTTTTCATTATTAGGCTATGTTATTTCCTTTTGACACTATAGAGGCTGGCCTCGTTATATTTCAAAAACGTGTTCACTGTAAAGGAAACAGCGGATGTTCGTGAACGAatagagacaacaacaacaaaaaatacacttATGTGACAGGTTTTTTTCTGTTATTTTTCTTGTCCAAATGAAAACTCCTCTGCAGTGTTGCATGAATGTCTTTCCTCACAGATGACGTTATTTGAGTCGGTTCCATTTCACTCTCGTGCTCTCCCTCCgtggacagcagacagacagacagacactccgaGGACCTGATGAAGCTCTCACTTCAATGTCACAGTATTTGGATTTCGTGGCTTCTAGACGTGTCAGGATGTGTGGAATTCAGACATTTGCCCGAAAATGTTACATTATTTTGCGAATGGTGAACTTCCGTTAGTCTATGTTTTATACAATGCAATGGAGTGCATTTGCGAGTGATTCGACCTACTGAAAGCGCAATATATGTCACATGTTAAGAATGACaaaatatttggtcaataatTGCAGTAGGCTATATGTGAGACGGTACGGAGCACATGTAAAATATGTTAATACACAAGAAACATgcattattttttgttattttgtggcTTATGAGTGCATTGTGAGAGCATTTTTGTTTTCTATTTTACTGTCTTTCCGTGTGTAAAAATCATGTGCATTCTGTAGGCTATGTAATGTTGATGTTTTTATAACAGTAAAAGTGAACGTAGCCCCTACCTGAGGCACGGATTTCTAAAAATATCATAGAAATTCTTATACTTTTTTCATCACTTATGTGAAACGTGAACTCACCTGAACAACATGTTTTCGGTTCATAGAATAAATCAACTGAAGTTTCTTTTTA
>XM_021587298.2
AGTACAGGCGAAGGGAAGGGGGCTCATCCCGGCATCCTGAGGGGAGGTAATTTGCACAGATCAAGGGGCAGGCGTTGCAAAGTATAAATACTGTGACTTCAATAGCGGATCACCAGCAGGTTGGAACTCCGCAGCAAGAAGAATTTGTCGAGATCTTATACATTTAGCTGCAGCACGAGATCCAGAGTTGGCAACAACATCACCTTGCATTTAGGTCGTCTAAAATAAACACTCTTGATGTCTTAAACTGTTgtggaactgagagagagagagaacgagagagcgagagtgagagaccAAGACGAGGAGATTTTTTGGAGCAGTGATGGAAGAACTTACCGCGTTTGTGTCGAAGTCTTTTGATCAgaaagtgaaggaaaagaaggAAGTGATCACGTACAGGGAGGTGCTGGAGACCGGATCCGCGCGAGCCAGGGAGGGTCTCGCCAGCGATCCGAATCGCGAGGAAATGAACGATATCGCTCGGGTAGACGCGCGATCGCCAGGCAGGGAACCGGACATGCTGGGGCCAGAGAGAACCAGGGATGTGGGAAGCCCGAAACTGATCGATGGTACCACGCAcatgaaagagagaaaagaggacaCAAAGCAAATGGAGGACGAGGCACAGACTAAAATCAAGCAGAGGAGAAGTCGGACTAACTTTACACTGGAGCAATTGAACGAGCTAGAGCGGCTTTTCGATGAGACCCACTATCCAGATGCCTTCATGCGGGAGGAGCTGAGCCAGCGGCTAGGGCTGTCCGAGGCTCGAGTACAAGTTTGGTTTCAGAACCGGAGGGCCAAATGCAGAAAGCAGGAGAATCAGTTACACAAAGGAGTTCTCATTGGAGCCGCGAGTCAGTTTGAAGGTTGTCGCGTAGCGCCATATGTCAACGTGGGGGCCTTACGGATGCCATTCCAACAGGTCCAGGCGCAACTGCAGTTGGACAGCGCGGTGGCCCACGCGCACCATCACCTGCACTCTCACCTGGCAGCGCACGCCCCTTACATGATGTTTCCGGGCCCGCCATTTGGTTTGCCCTTGGCTACGCTCGCGGCTGAATCCGCCTCTGCTGCCTCGGTTGTGGCCGCAGCTGCAGCCGCCAAAAACACCAACAAAAACTCCAGTATTGCAGATCTGAGACTCAAGGCCAAAAAACACGCGGCAGCTCTGGGACTGTGACTAGGCGTGCAACAAGGTGTATATGGCGTCTAAAAAGGCCTACATTATTGACTTGAGAGTCATCAACAACGCAGAGGCATCAAAACAAAAAATGCTTTACAAAGTGAAAGCAAGGACatatatgtttttttgtttgttttttaaacgaAGGACATCATGTATAACTATAGAAAATAGGCTATTTATGAGATAAAAACAAAGATAGACTGTGAAATCGATAATAAAGGGCGGGAGTTGATATAGGCTACGTCTTCACAAATGCCACGTGGTAACTGCACCAACGTGAAACTAGGGTGGAGGTGTCAACGAGCAAGATTTCCAAGAGGAACGATGCCGCATGGGACGTTCGACTCTTTGTGAAACAAGGAGAACTATTCTGCGTTGTTTTTCATTATTAGGCTATGTTATTTCCTTTTGACACTATAGAGGCTGGCCTCGTTATATTTCAAAAACGTGTTCACTGTAAAGGAAACAGCGGATGTTCGTGAACGAatagagacaacaacaacaaaaaatacacttATGTGACAGGTTTTTTTCTGTTATTTTTCTTGTCCAAATGAAAACTCCTCTGCAGTGTTGCATGAATGTCTTTCCTCACAGATGACGTTATTTGAGTCGGTTCCATTTCACTCTCGTGCTCTCCCTCCgtggacagcagacagacagacagacactccgaGGACCTGATGAAGCTCTCACTTCAATGTCACAGTATTTGGATTTCGTGGCTTCTAGACGTGTCAGGATGTGTGGAATTCAGACATTTGCCCGAAAATGTTACATTATTTTGCGAATGGTGAACTTCCGTTAGTCTATGTTTTATACAATGCAATGGAGTGCATTTGCGAGTGATTCGACCTACTGAAAGCGCAATATATGTCACATGTTAAGAATGACaaaatatttggtcaataatTGCAGTAGGCTATATGTGAGACGGTACGGAGCACATGTAAAATATGTTAATACACAAGAAACATgcattattttttgttattttgtggcTTATGAGTGCATTGTGAGAGCATTTTTGTTTTCTATTTTACTGTCTTTCCGTGTGTAAAAATCATGTGCATTCTGTAGGCTATGTAATGTTGATGTTTTTATAACAGTAAAAGTGAACGTAGCCCCTACCTGAGGCACGGATTTCTAAAAATATCATAGAAATTCTTATACTTTTTTCATCACTTATGTGAAACGTGAACTCACCTGAACAACATGTTTTCGGTTCATAGAATAAATCAACTGAAGTTTCTTTTTA

Function

symbol description
shox2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within heart development and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in apical ectodermal ridge pectoral fin bud; heart; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human SHOX2 (short stature homeobox 2).

NR:

description
short stature homeobox protein 2-like isoform X2

GO: NA

KEGG:

id description
K09331 SHOX; short stature homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587297.2 False 2483 mRNA 0.45 5 3881456 3889254
XM_021587298.2 True 2450 mRNA 0.45 5 3881456 3889257

Neighbor

gene id symbol gene type direction distance location
LOC118944719 LOC106580716 coding downstream 127810 3746369 ~ 3753646 (-)
LOC118944734 LOC106580716 coding downstream 141388 3735454 ~ 3740068 (-)
LOC110507640 LOC106580716 coding downstream 146525 3729977 ~ 3734931 (-)
LOC118944783 LOC106580716 coding downstream 155188 3719130 ~ 3726268 (-)
LOC110507356 LOC106580682 coding downstream 162969 3539029 ~ 3718487 (-)
LOC110507359 med29 coding upstream 254965 4144222 ~ 4148910 (-)
sik2b sik2 coding upstream 311685 4200942 ~ 4268979 (-)
laynb layn coding upstream 381205 4270462 ~ 4276432 (-)
zgc:162608 LOC106612462 coding upstream 402143 4291400 ~ 4298680 (-)
drd2a d2r2 coding upstream 582794 4472051 ~ 4505952 (-)
G2042874 NA non-coding downstream 15838 3865370 ~ 3865618 (-)
G2042848 NA non-coding downstream 41357 3839859 ~ 3840099 (-)
G2042840 NA non-coding downstream 49691 3831560 ~ 3831765 (-)
G2042822 NA non-coding downstream 81582 3798525 ~ 3799874 (-)
G2042816 NA non-coding downstream 84409 3796760 ~ 3797047 (-)
G2043227 NA non-coding upstream 29208 3918465 ~ 3953916 (-)
G2043337 NA non-coding upstream 181848 4071105 ~ 4071917 (-)
G2043373 NA non-coding upstream 303536 4192793 ~ 4193567 (-)
G2043374 NA non-coding upstream 306022 4195279 ~ 4196134 (-)
G2043439 NA non-coding upstream 426445 4315702 ~ 4316070 (-)
G2042608 NA other downstream 478459 3400579 ~ 3402997 (-)
G2041885 NA other downstream 982068 2898987 ~ 2899388 (-)
G2041883 NA other downstream 985065 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 3110719 769005 ~ 776178 (-)
G2043460 NA other upstream 454342 4343599 ~ 4348409 (-)
G2043483 NA other upstream 489677 4378934 ~ 4379429 (-)
G2043518 NA other upstream 524808 4414065 ~ 4414423 (-)
kmt2a kmt2a other upstream 1651770 5531877 ~ 5586139 (-)
G2045223 LOC106612485 other upstream 1979318 5868575 ~ 5870139 (-)

Expression


Co-expression Network