laynb (layn)


Basic Information

Item Value
gene id laynb
gene name layn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4270462 ~ 4276432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587312.2
AgcattcctcctttcctccttttaTCTTCGATGGATTTACTCAAAATAATGAGCCTTTCGCAGTGAGAGGGGTTTAAAAAACGCTTTACCGGATCCTGCAAAAATACTTCGACCTAATTCTGATTGGACCATATGCGATGTTTCGCCCCTCTCCCAGGCTTTGACGGGCGGTTACGGATTTTCTCGAATTTACACGAAAGTTTAGTGAAGATGAAGAAATGGATTTTGTTAAACTGCTCGGGACTGTTCTCGCCGTTTTCTGCCACTTAGGATTCACCCAATTTGAACACAATGGCCAGAGGATCTGTCGACGTGGCACAGAGCGACCCTGCTACAGGATCAACTACTTCCAGGACCCACGGCGGAGGGTGACCTTCGATAATGCCAGGCAGGCCTGCAGGACGGATGGGGCAGAGCTCCTCAGTATCGAGACTGACAATGAGCAGCGTCTGGTCGAGAGGTTCATCCAACAGTTGCAGGCCACTGATGGGGACTTCTGGATCGGGCTGCACAGAAGCCCACGCCACTGGGTGACTACCATAGGATGCCCTTCGCAGTACTACTGGCTGGATGGCAGCAAGGCCAGATTCAGAAACTGGCATTGGGACGAGCCATCGTGTGGCAACGAGATGTGTGTGGTGCTGTACCACCAGCCTTCTGCCCCCCCTGACGAGGGGGGGCGCTTAATGTTCCAGTGGAACGATGACAACTGCAACACCAGGAACAATTTTGTCTGCAAGTACTCCGAAGaAAAGTTACCAGTGTTTACTGTGGTGTGGAATTCATTATACACAGTTGCCCCAATTATATCTTTAATACCAATCCTCCCATCAGCTACAGTGAGTGATGAGAAGACAAAACTAGGACTGTCTGAATCATCAGTATCTCTTTCAGATAATGTCCTGCATGTCTCCTACATTCTATTTGCTACTATCCCtattctactgctgctgcttGTGGCTACAGGAGTCTTCTGCTATAAACGGGCTGCCAAAAGGAGAAAGTCTCCAACAGACAGCTACCCTAAGCAAGAGCAATGGGGTACAATGTCCACTGCGGCCTGCAACATCCAAGGACCCTATGCCTACCAGGACATCACCAAGCTTCAACCAGCCGAACTGGAGAGCATGGCACCTGAATCAATCAAGAAGATGTCCTTCTGTGCCTCCTCTTTTGATTCCCAGTGTGATGATTACGAGAATGTTTCAAACAcggagacagtgacagagagtgGCTTTGTGACCAACGATATCTACGAGGCCTGCCAAAACCAGGGTCGGCACTATCTCAACGAGACTGGATGGGTGGAGAATGAGATCTATGAGTAATGTTGCAGCCATGCAGTGCCTCTCTCTTTACCACATGTCCACTGGGCCATCTGGGCATCTGACTCTTTTTGTCTCCATTCAACTTTCATATCTCCTGCTGGTGGGTTGTATGGCATCATGTGATGCGAGACAGGATGGACAGATCCTGTGTGGTATTATATAATGTTCGCTTTAGGGTACGCCCACTAACCGTACAAAGAGGCCTATGGTGTCACCCCTATTTGAGGTTTCCTGTGTGGAAGTTGATGTCAGGGAACAGGACAATATCTTCGGAAATTCGGATAACAGAAGTCTGACCCCACGACACCTCTGAGCAATGGCTGTCTGCGAGAGATGATCCTCCCAGTGATGTTTAACAAAGCCTCCACTGCTATGACACTAGTTTGAGCTGGCTGGATAAAGTCATAATGTGCCTTTTCATGGCTACACCAAAGTCCTGGTTGAATAACAGAGTGTAGCATTTGTTTATTTGCCTATTCCTGTGTCTTCGTCTTATAATCTTGTATTTATCACAATGTTGTGAGAAAAATCaagaaaatacatgttttgcGTACATGGTAGATTCAAGTGGGCCTGACTAGAGTGTTGTGAAAAAGTAGTCTTAACGAGCTAAAGCTGAGTGTTCTTGGAGGATGTCGGACAGGAAATACCAAAAGCACATCTGGAACTCGCACATACAGGAAATCTAGCAGTGACAGCAGATGCTTTTGGGGTGCTGCGCTCAACAGTTTTCCATGTAAGGCTGTCACGATAGGTTAATTAACAAAACATGTACTTGCTGGACCTGTAGGCCTATATGGGTGATATTTCAAATATCGCGCACCGCTCTGgctacaaataaatgttttgttttaattttttttataacaATGTGCCTTTTATTGTGTTTTTGTGTACAAGAAGAAAGAAAAATAGACCATTTATAAGCCGTAAAACCTTTGGTAAGATATAGCTTACTTTACAGTACTATTGCAAACAGTACTTACTTATGGCTTCCATATTGTTTGTTTGACCGGCAGATGGTGCTGTTTCATGTCATATTTCAACTGTCTTTCCATTGGTCTCGAACTCCAGCAGTTTCACTCAAATTCTATGTTGATCGCTAGATGTGCAAAGGGT

Function

symbol description
layn Enables hyaluronic acid binding activity. Located in focal adhesion.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K10077 LAYN; layilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587312.2 True 2447 mRNA 0.46 7 4270462 4276432

Neighbor

gene id symbol gene type direction distance location
sik2b sik2 coding downstream 1483 4200942 ~ 4268979 (-)
LOC110507359 med29 coding downstream 121552 4144222 ~ 4148910 (-)
LOC110507357 shox2 coding downstream 381205 3881456 ~ 3889257 (-)
LOC118944719 LOC106580716 coding downstream 516816 3746369 ~ 3753646 (-)
LOC118944734 LOC106580716 coding downstream 530394 3735454 ~ 3740068 (-)
zgc:162608 LOC106612462 coding upstream 14968 4291400 ~ 4298680 (-)
drd2a d2r2 coding upstream 195619 4472051 ~ 4505952 (-)
scn3b LOC106612464 coding upstream 273793 4550225 ~ 4572371 (-)
LOC110507371 NA coding upstream 296598 4573030 ~ 4626743 (-)
ccdc153 ccdc153 coding upstream 1069896 5346328 ~ 5350245 (-)
G2043374 NA non-coding downstream 74328 4195279 ~ 4196134 (-)
G2043373 NA non-coding downstream 76895 4192793 ~ 4193567 (-)
G2043337 NA non-coding downstream 198545 4071105 ~ 4071917 (-)
G2043227 NA non-coding downstream 316546 3918465 ~ 3953916 (-)
G2042874 NA non-coding downstream 404844 3865370 ~ 3865618 (-)
G2043439 NA non-coding upstream 39270 4315702 ~ 4316070 (-)
G2043441 NA non-coding upstream 41361 4317793 ~ 4318109 (-)
G2043442 NA non-coding upstream 42471 4318903 ~ 4319268 (-)
G2043443 NA non-coding upstream 43676 4320108 ~ 4320351 (-)
G2043446 NA non-coding upstream 47167 4323599 ~ 4323821 (-)
LOC110507356 LOC106580682 other downstream 728709 3539029 ~ 3718487 (-)
G2042608 NA other downstream 867465 3400579 ~ 3402997 (-)
G2041885 NA other downstream 1371074 2898987 ~ 2899388 (-)
G2041883 NA other downstream 1374071 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 3499725 769005 ~ 776178 (-)
G2043460 NA other upstream 67167 4343599 ~ 4348409 (-)
G2043483 NA other upstream 102502 4378934 ~ 4379429 (-)
G2043518 NA other upstream 137633 4414065 ~ 4414423 (-)
kmt2a kmt2a other upstream 1264595 5531877 ~ 5586139 (-)
G2045223 LOC106612485 other upstream 1592143 5868575 ~ 5870139 (-)

Expression


Co-expression Network