zgc:162608 (LOC106612462)


Basic Information

Item Value
gene id zgc:162608
gene name LOC106612462
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4291400 ~ 4298680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587314.2
ttgttaaagaaTGGTGTAAAGTCTAAGCAGAGGGAGCTGAAGACGGGAGGATAGatggaagtgaatgagggtgACATATCGGAGGTGATAGATGTGGTGAAGTTATCGAAGACCGAGGCAGAGTTTAGGACAACCAATGATAAGAAGGACCCATCCCTTTATAAGTACGGTCTTGATGGAGAGTCATTCTGCCAAACCTAGTACATAGtctaaaaaaaacaacaaaaaaaacatgcatcTCAAAGTAGTGATCTTCGCCTTGTCGTTTTTGACAACCACAGCATTCCCACTCCACCGTACCAGCAGAGAAGCATCACAGGCCCTACAGGACATAATGACCAATCAGGCTCATGAGAAGACAGACCTCAACAAGGATGTCAATGGGATGTGGAAGAGCCATGTGGAGAGCAGCAACCTGTACACCCAGGACAGCCCCAACCCCATGGTGAGCGAGATCAGGCACAAGCTTACCCTGGAGTCCGAGAGGCTGCGCGCCCGCCTTCGCCAGGAGCTCGCTAAGTTGAGGGAGAGGCTCGCCGTGTACCCTGCCCACACCCAGTCCAGCGAGTCCACCCTGGCCAGCGTGAGAGATCGCCTGGCCCCACTGATCAAGCAGCTCCAGAGCGCCGTGAACAGCAACAGCCAGGAGCTGTGTAGCCACCTCAGGCTCTACTTTCAGGGATTGGAGGCTGCGGAAAGCCAGGCAGCGGCCGGACCCACCCTATACCTGGAGGCCGTGCAGTGGATCAGCCAGACCTTGGATGACAGCAGTGCCAAAATGACCTCCGTCATCCAGGACTTCAAAACCAAGACATCCAGCATGATCAGGGAGCTCAATGGTACCTTCCAGGGGGACTTCTGGCAGGAGGTGAACGTACGGCTGGGGCAGGAGGTGCAGGCGTTGAGTCTGGAGGTCCAGGGCAGGGTGGGGGTGCTGAAAGCAAAGCTGGCCCATCTCCTGCTGGCTCCACACCCCCTCACGGCAGAGGTGTTCACCAGCATGGAGCAGTTCTGCCAGAGTGCCACCTTACAGGACCAGTTGTTCCATGCCAGAATAGAGAAGCACCTTCTGGGGCAGGAGTCACAGGCTCAGAGCCCCAGCGAGCCGCCCTCTCCACCTCTGGGCTTATTGGAGGAGGACTTCTCTGCGAAACTAAGCGCTCTCCTCCAGGACATTCTGCACACTGTCCAGTAAAAGCAGAACAGAACTTTACTCATagcaaaatgagagagaaagacatttaAACTATATTGTTGTTTCTGCTCCTTgtgcttatatatatatatatatatatatatgtcaacTCCTCTACcattgtatatacagtacagtaagtaATCCATGTATATTTATGTTTTTGCTGTTGTTTATTTCATGTGGATGATTGTTGTAAGGCATTTTATTTTGTCAACTGTAAATAAAGCTTGTGTGAAGTTTA

Function

NR:

description
uncharacterized protein LOC110507365

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587314.2 True 1439 mRNA 0.51 5 4291400 4298680

Neighbor

gene id symbol gene type direction distance location
laynb layn coding downstream 14968 4270462 ~ 4276432 (-)
sik2b sik2 coding downstream 22421 4200942 ~ 4268979 (-)
LOC110507359 med29 coding downstream 142490 4144222 ~ 4148910 (-)
LOC110507357 shox2 coding downstream 402143 3881456 ~ 3889257 (-)
LOC118944719 LOC106580716 coding downstream 537754 3746369 ~ 3753646 (-)
drd2a d2r2 coding upstream 173371 4472051 ~ 4505952 (-)
scn3b LOC106612464 coding upstream 251545 4550225 ~ 4572371 (-)
LOC110507371 NA coding upstream 274350 4573030 ~ 4626743 (-)
ccdc153 ccdc153 coding upstream 1047648 5346328 ~ 5350245 (-)
LOC110507384 mcam coding upstream 1144335 5443015 ~ 5490555 (-)
G2043374 NA non-coding downstream 95266 4195279 ~ 4196134 (-)
G2043373 NA non-coding downstream 97833 4192793 ~ 4193567 (-)
G2043337 NA non-coding downstream 219483 4071105 ~ 4071917 (-)
G2043227 NA non-coding downstream 337484 3918465 ~ 3953916 (-)
G2042874 NA non-coding downstream 425782 3865370 ~ 3865618 (-)
G2043439 NA non-coding upstream 17022 4315702 ~ 4316070 (-)
G2043441 NA non-coding upstream 19113 4317793 ~ 4318109 (-)
G2043442 NA non-coding upstream 20223 4318903 ~ 4319268 (-)
G2043443 NA non-coding upstream 21428 4320108 ~ 4320351 (-)
G2043446 NA non-coding upstream 24919 4323599 ~ 4323821 (-)
LOC110507356 LOC106580682 other downstream 749647 3539029 ~ 3718487 (-)
G2042608 NA other downstream 888403 3400579 ~ 3402997 (-)
G2041885 NA other downstream 1392012 2898987 ~ 2899388 (-)
G2041883 NA other downstream 1395009 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 3520663 769005 ~ 776178 (-)
G2043460 NA other upstream 44919 4343599 ~ 4348409 (-)
G2043483 NA other upstream 80254 4378934 ~ 4379429 (-)
G2043518 NA other upstream 115385 4414065 ~ 4414423 (-)
kmt2a kmt2a other upstream 1242347 5531877 ~ 5586139 (-)
G2045223 LOC106612485 other upstream 1569895 5868575 ~ 5870139 (-)

Expression


Co-expression Network