LOC110507371


Basic Information

Item Value
gene id LOC110507371
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 4573030 ~ 4626743 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587319.2
TGTTTGACCTGTCCAGCAGGGTTTTACTGTGCAGGCTCAGTACATCCTAACACAGAACAGGAGGTGGGAACACACATGCCAACCCCTTGTCTGAAGGGACACTACTGCCCCCCAGGCACACGGTCTGGTGTGGAGCACCCATGCCCAGCTGGCACGTTTAGTGGGCAGACCAGCACGTCTAATAAGAGTGGGTGTGTGCCCTGCCCTCCAGGGAAGTACTGCAGCTCTGCAGGGTTGGCAGTGCCTACTGGGCAATGCTCTCCTGGgTACCTTTGTATCCGAGGCTCTGTTACTTCTCAGCCAACTGGAGATCCTACAGGTGGAAAATGCATCGCTGGGTCCTACTGCCCACTGGGTACCAGTCACATGCTTCTATGCCCGCCTGGCACTTTCAGCTCCTTAGAAGGGGCAGTATCTGTGGCTGCGTGCCAGCCCTGTGTGCCTGGGCAGTACTGTGCAGACTTTGGCCTTGCCTCCCCATCTGGTCCCTGCAGCGCTGGGTTCTACTGCCCAATAGGATCCAGAACCCCCATGCCAAATCATAATGCAACAAGACATAATGAAACAAGAAATGCAACTTCTGTATATCCTCctcgtgatggagaggtcttggaacAGATCAATGGAGACCTGTGTCCAGGAGGCCACTACTGTCCGATTGGGACTGCTCAGCCAATACCCTGCCCCCCAGGCACCTTTCTGGGTGGATATGGTGGTCAGTCAGAGGCAGACTGTGAGGCTTGTCCGTCTGGATTCTACTGCCCTGTGTGGGGGCAGACCACCACAGACCTCCACTGTCCCCAGGGTTGGTTCTGTCCAGTAGGCGCTGTATCAGGGCATCAACCAGAATGTCAGTGCCCATCTGGTCATTCGTGCCCGTATGGAAGTGCCAAGCCGGTCATCTGTGCCCCTGGCACCTATCAGTCTTTGATTGGTCAGTCTACATGCAAGACCTGCCCACCAGGTTTTTATTGTGTGGAGGGAACCTCTGTCCCAGCACCGTGCCCAGTTGGCAGTGTGAGTCAGGCTGAGGGGAGAGCATCTCAGAGGGAGTGTTCTCCATGCCCTCCTGGGCTCTACTGCAACAGCAGTGCTCTCACCTCTCCCTCAGGACCCTGCTCTCCAGGCCATTTCTGTTCCCGTGGAGCTACTGTTCCTGATCCAGTCTCCCAGACCTTTGGGGATGTCTGCCCTCTAGGACACTACTGCCCAGAGGGTAGTGGGTCGCCCAGACCCTGTTCTGTGGGTAGCTACCTTCCAGAGAGGGGCGCTCCATCCCCCTCCCGCTGCTACCCTTGTCCCCCGGGAAGATACTGCCTCAACCCAGGCTCCTCACAATTCACAGGTCCTTGCTCCCCTGGTTTCTACTGTAGTGGCGGTGCAGACAGTGCTATACCCCAGGCTAACTCCTCCCAGCTCAGCTGCCTTTGTGGCATGATAAAGGTCCATCCTACTAACCAAGATCTTTGTTCCTGGTTACACAACACTTCCTGCTCACCTAACAGTATAGATACAGATGGAGATGGGAGCTGGATGGATGTCGTAGCTAGGCCATGGTCAGGTCAGGCCTTGGCCGACTCTACACCTCATCTCAGGAGCCCACTTTATAAATGTGCTAACTTCAAAGGCGATGTATGTCCCAAAGgtttctactgtcctgtaggatCGGCTTACCCTCAGCCCTGTGATACTGGCTTCTACTGTGGTCAGACTGGCCTGGAAGCCCCCAGTGGCCTCTGTACCCCAGGCTATTTCTGCTCCAGGGGTTCCACGACCCCTCACGCCTCACTCTGCCCCCCAGGACACTACTGCCCCCAGGGcacacctctccctctaccttgcCCTCCTGGAACCCTGAAGGGTCGATCAGGCGGGTCCACAGTGGACGATTGCCAGCCTTGCCCCCCTGGTCATTACTGCGATCAGATAGGCTTGGCCGAGCCCAGCGGTCAGTGTGCTGCTGGCTACTATTGTCCTGGGGGACAGAGCACTGATAGACCGTCGCAACATGTGTGTGGAGTTGGTCATTTCTGCAAGGAGGgtagcgtgagagagagagcctgtgCCCCAGGCAGCTACCAGCCTAGTGAGGGTCAGCAGCGATGTGAGGTGTGTCCTTCTGGCTTCTACTGTCTTGAAGAAGGAAGGACACACTTGGTTCCATGCGGAAGAGGATTCTATTGCCCACGTGgaacagccaatcagcatccttGTCCTTCCGGGACCTATGGAAACTTATCAGGATTGGCTGACGAATCGGAATGCTCTTTGTGTGAACCGGGGATGTACTGTAAAGGAACAGGGAGAATTTCCCCCAGTGGTCCATGCAGTGCAGGGTTTGTGTGTTTTGGGGCCGCCTCTCAACCCTCCCCCTCAGACAACATCACAGGCGCTCCATGTCCTCCTGGATTCcactgtcctgttggaagctCCGTACCATCGCCCTGCCCTAAAGGCACATTCAGTGAGCAAAGTGGACTAACGGAGCCCTCCCAGTGTCGTAGATGTGTTCCAGGGTTCTACTGTGCAGAGCCAGGCCTTAAAGCAGTCACTGGAGCCTGTCTGCCAGGTTTCTACTGTTTGGAAGGGTCCCAGAGTGCTGCCCCGATGTCAGGTGTATTTGGAGGTGTTTGCAACCCAGGCCACTACTGTGAGAGTGGGACAAGTGTGCCTGCATCCTGCCCTGCTGGCACTCATCACAATAACAccggagggaagaagagagatgaCTGCAAGCCATGTCCTGATGGTTGGTTCCAGGACTTGGAGGGCCAAAGGGAGTGTAAGCCCTGTCCCCCTGGCTCTCACTGCCTGACCACCAACACAACTGGCAGCACCAGTGGCCCCATCACCCCTCTGCCCTGCCCAGCTGGCTATGTCTGCCCCAGAGAGAGCTCCTTCAGCCAACCCTACCCCTGCCCCAAAGGCACCTACAGCCCTACTCTGGGTCTCACATCCCTTGGGGAGTGCTTGGTTTGTCCGGCGGGCCAGTTCTGTGGATCAGAGGGTCTGGTTGAGCCCACTGGACCCTGTGCTCCTGGGTTCCTCTGTGTTACCAGGGCCACAGTGCCCAACCCCACCGACAACAGGACAGGGTCAACCTGCCCCCCCGGATCATACTGCCAACTAGGATTCAGAGCAGGTGCTTGTGCCCCTGGGTTCTTCTGTGACTGGGGCTCCAGTAGTCCTGAGGAGGCCCTCTGTCCAGCAGGCTACTTCTGTCCAGGAGGAACTAGGACCCCCCTGGCCTGTCCTGCAGGGACACACAGCTCAGTGACAGGCAACAGCCACCAGAACAACTGTACAACATGTCCTGATGGCTACTACTGTCAGGGAGAAGGGGTGGTCTATCCAGTGGTCTGTCCTCTTGGTCACTACTGCCCTCCTGGGTTGGCCGTGGGTGTGAAGTTCCCCTGTCCCCCTGGCACAGTGCAGAGCAAGCCTGGAGCCTCCAGCCTGGACCACTGTCTACCATGCCCTGCAGGGATGTTCTGTGCCCTCCCTGGGCTCTCCCAGACAACGGGGCCTTGCCAGGCAGGATACCACTGTCCCCCAGGTGCCATCACACCCAATGCTACTAAATACGAGCAGAATTCTACTAGTAATAATCTGTGCCCCCCTGGCCACTACTGTCCAGCTGGCACTGGCTACCCTCTTCCATGCCCACCGggctctctctccagctccctgGGACTGAGGGGCGTAGAGGAGTGCCAGCCTTGCCCCCCTGGGCACTTCTGTGACAGGCCTGCGCTGACCGCGGATGCCGCTCCGTGTAGCGCTGGGTATGTGTGTCTAGGGGGTAGCTCCAGTGCCCATCCCTCGGATGGTCTCCATGGTTACCTGTGCCCCACAGGGCATCGCTGTCCTGTTGGCACAGCTTCAGCGGTACCctgtgagcctggcacctacagTCCTGCTCCTGGTGCCGCCCACTGCCTCACCTGCCCTAATGGCACCATGTGTCCCTCCTCTGCCACCCAAGAgccctctctctgccctgctGGTCACTTCTGTCCTGCCCGGTGTGTGTtacccctgccctgtcctgttgGGACCCTCAGTGAACAGACAGGAGCCCCCTCGCCCTCTGCATGCAGGCCCTGCCCCTCTGGGCTCTACTGCAGCTTGCCCGGCTCCTCACTACCACAAGGCCAGTGCCAGCAGGGCTACTTCTGCCAGCGTGGAGCACATAGTCCAGCTCCCCAGAGCTCAGCCACCTTTCCCAGGAACGGGCCCTGTCCTGTGGGCCACTATTGCCTTTCTGGGACCCTCTCCCCACTGCCGTGTCCTGCAGGCAGCATCCGAAACCACACCGGTGGGTTATCCTTAGACAGCTGCTCCCCTTGTCCCCATGGACACTACTGTTCCATTGAGGGCCTGGCCTCCCCCAGTGGCCTGTGTGCTGCTGGCTTCTACTGCCCGTTTGACTTCTCCTCCACCACGCCCTATGCTTTCCTCTGCCCTAAGGGTCACTACTGTCCAGAGGGCTCTCCCCTGGCCCTGCCCTGTCCTACAGGAGAGTACCAGCCCAACCCAGGCTCTGACTCCTGCATCCCATGCCGCccaggcttctactgtgaggaGGCCATTGTTGGAGAGCCCTGGCCCTGCCCCCCTCACTCCTTCTGCCCTGCAGCCACCATGGTTCCCCAGCCGTGCCCCAACGGTACGTTCACCCCTTCTGAGCAGGGGGGGTTACAGGAAGAGCGGGAGTGTCTGCCCTGCCTCCCAGGGAGGTTCTGCAGGGCTGGTAAGATCAAGGGCCATTGTGCAGCAGGGTATCTGTGTATGTCTGGCAGCTCTGAGTTCACGCCACAGGGGCCTCACTCCAACTGGAGCCAGTGTGAATGGGGGATGCAGTGTGCCGGCCCCTGTCCAGCAGGATTCTACTGCCCAGAAGGTTCAGAGAAGCCTGAAGTCTGCCCTGATAACACTATCAGAGTTTTACCTGGAGCAGCCAATATCCATGATTGTCTGTCTTGTCCACCACAGCACTGGTGCAAAAAAGGTGACCCTGTCCTGCACCTGTGTCCTGCTGGTCACTACTGTGATGGGGTGGGTGGTAGTCACTACGAGGGAGGGACTGAACCCAGGGAATGTCCGTTATTTACCTACAGATCCGCCCCCGGGGCAGCCAGCAAGGGGGACTGCCACCCCTGTCCTCCTGGATTCTACTGTAACTCTACAGGTTTTACAGATTACTCTGGCTACCCCTGTCCCCCGGGCTACTGGTGCAGTGGCACTGGTCTACCTATACTCTGCCCTGCGGGTACCATGAGGCCCCTTCCAGGGGCGGCAGCTGCCAGTCAGTGTGAGCCGTGTGCGGGGGGCACCTACTGCCCAGACCCCATGTCCACAGGGCAGCCCAACATTGCTGGAATCTCCTGTAGAGCCTCGTTCCAGTGTCCCCCTGGTGCGGTCTCAGAGAGGCTGTGCAAGGCTGGCTCTTACTGTGGGCCCCAGACTGCAGAGCCTGAAATCTGTCCTGAAGGCTACCTCTGTCCAGAGGGATCTCACACCTACAACACACCGAACCAAGTTTGCGCGTTTCCCTACTATTGTCCTGCCAACAGCTCTGCCATGCTGTCCTGTGAGGGGGGCTCCGTGCCCCTCAACACCAGTGGCCCCAGAGCCTCCCAGGACAGCAGCTGTGGGCTGTGTGAGGCAGGGACCTACCGACCTCGGCTGTCCCCCCAGCCTCAGTGCCTCACCTGCCCACCAGGGTACCACTGCCCTCCAGGGACAGAGCACTACCACAGCAACCCCTGTCCCCTGGGCTATGTGTGTCCGCTGGGCTCATCCAGTCCTGTCCCTTGTCCCCCTGGTTCTTTTGGTAATCTCTCCAACGCTGAACATGTGGAGGACTGCTACCCATGTCCAACTGATACCTTCAACCATCTGGCTGCCCAGAGAGCCTGTTTCCCCTGCGGAAGTTCCTCTACTGCACCCCAAGGGGCCTCTTCCTGCACCTGCCTTGGGAAGAACCGTGCTTTCCAGCACTCAGACGGCTCCTGTCTGTGTCGAACCGGCTTCATTTTCTACAACAATCTGGATTTCAAGATCTCCAGCTCTGACAGTGAACTGGACTGCCAGCCTGAGGTGAACAAGCGCTGCAGTGCAGGACAGGTGCGCCTGGCTGCATCCAGAGAGTGTGTCTCACCCTCTCACCACTCCTGTAACGTCACCTGTGGACCTCAGGGAGGGAGTCTGGATGTGGAGATGGGCATCTGCCACTGTGAGCGCTACGTATCAGCAGAGGAGCTATGCAACACCCCGTGTCTGTCCAGACTGCCCCACATCTCTGCCAGGCTCTCCCCAGATGGACAGCTGCTGCTGGGGATCAAAGAGCCAGATGAAAGCCGAGtgtggagcagaAAAATGATGGATGTTTTGGGACCAGACGTCCACGTGAAGAACATTGGAAACATCCACTTTGTTCAATTTGATTCTGAAGGTGTATTTGGTTGGATTCTGATGGACCGAAATGTTATTGAAATGACCCTGACAGCAGAGCCAATCGAATTTATTGACATGCGATCAAGGAAGAGGAGGGATCTAGAATCCAAGGCAGAACTTCTACACTCCGATGTCCTCCCTCGTATCCCCAACCCCATAGCCTGCCTCTCCTCCAATGACATGCTCATCTTCCAGCTCACCATCAACTACAATGACCGTCACCTCAGCCACTTCCCAGTGTACCAGAAAGACCATCTATTCAATAGCAACCCTAGCTGGGACTTTGGGGCCTTCCGGCGGCTAGAGCGACTCATGAAGCAGACTCAGTTCAACTCTACCAGATTTGCACACGTGTTCTCAGAGACGGGGAAGTATGTGTTCCTGGACAACGCCATTCCAGAGTGGAGTCTTGTGGTGGTGGtcagtgagagagggacagagtgtgACCCCACTGCAGCCGTTTTCCAGCCCATGACCCCCGCCCAACTGGTCAAGCACGGGGTCATCAAACAACACCGGCTCAACCTGCTGCCTGACTGGGGCGCCATCGTAGGTGTCCTGAGTCTCCTGCTTGTGCTGATCCTGGTGCTCACCACCACAGCTCTGGTTCTGAAGTCCAGTCGGGCCAAGCTGGTGTGCCAAGGCAAACTGAGGCCTAAGTGGCGGAGCCTGGGAGAGCCAATCCCTCCAGTGGAATACGTCTACAGTGGAGAAAGCCTGAATGGCCAGGGGGTGCTGGGCTGCAGGGGAGTCGGAGAGGGGGCTGAGGCTGAGGAGCCTGCAGTCTGCCGTGGAGGAGGATACATGACTGGGAAGTTTGATCTGGAGGAATTCAACGTGAAAACTCTCTACGACAAGCTGGAGGATCAGAACCTGCATTTGGCGTCCCAGCTGGCCAGGCACCGCAAGGACACCCAGGAGTTCTACCGGAATATCTGTCAACAAACAGATGCCCTGAGGGATGTTCTGGagaacatggaacccaaaaagttGAGTCTGTTGAAAGAACTATTGGAACGCGATGCCTTGCAGAATGAATCATACACCAACACGGATGCAGACGGGGATGGACATATCCAATCAACAAAAGATGCGTCAGTGGTGCTGATGGGAGCTGTAGTCAGAGCTTTGGAGGCAGTCCTGTACAGACTTAGTGGAGAGAGCTGGCAGAAGCATGACATGACCGCAGCACACTGCCACACAGACACCAGGGAGTGTGAACTGCACACAGGCTACACACAGTTTTCCTCAGCCAACATGACCAAACCTGCATCAGGCCATGAGACAGGACCACCACCTCATGATCTAGTACACCTACAGAGCACAGCCCCCTGTCTGAGTGAGCAGGACCTGTCCAAACTAGTGGCCATGACTCCTCTGTCCAGGACCCTGCAGGAGATACAGGAGTCCCTCCAGAACCTATCTGGTGTAGACAGAGCCAGGACTGACAAGACCACAGAGGACCCAGCAGTGCACCTGATTCCCGTTGCCCTGGACAACCTCTCCCCACAGCACTTTGCCATCTTCCTGTTCGGCTGTCATGTTGTGAAACTGCTTTGCAACACCCAAATCTTCCCCCCTGTCTTGCTGCTTCTGTCCAAAACGGTTCCTGTCTCAGCTTACGAGGGCCTGGTGTCACACTGCAgtggggacttttattttgacacaACCAACCAGATTCTGTATCTCTGTGAGGCAAAGCTTGAGAGTGTGGGACAGTTTATTGCCACTCTCCTACAGTCTATGGCCTATATTGCTTCAGGTTCCAAGCCTGAAAGCTTCATGCAAGTCCTCCATCATGCCATCTCTGCTTTGAGCCTTCAGTTGTTCAACGCCTCTTTCAGATATGATGCAAACAAGGCAAAGAGGGACACCTCACTGACCTCAGACCAGTCCCCTGGGAAGTTAGTAGAGGACTTTCTCAATGTCCGTGTCCCCACTGATAGCCAGTTCACAAGGCACCTCTTGTCAGACAGACTCCAACGATATAAGTATTTCAATGTGGAGCAAATCATGCGGGATCTTAAACAGTTTCCAGCAGAGGACACTGAAAAGGGACCTCCACAACAATGTTTAAGAACACCCGTCCAAGCTCACTGTTTGGAGAAGGAGATGGACCATCTGAATGAGGTTTTcctgcagctcagcgttcaactccAGAAGAGAACCCAGGGCGCAACAGCCGAGAAGGCCCTGAGTCGTAATGGAACAATGATGTTAGAGCTGAAGAGACGGTATGTATCCCAGAGGCTCGACGAGCTGCAAATCATATTAAATGGGATGAGCCGGCGCCAGCTAGACGGCCACAGTCCAGAGGAAGAGGAGCAGACCCGAGATCACCCACAACCAGAGCCAGACAACTATAGATCGGACGGTCAGGACGAACACGATCATTCTCCAGACCAGGAGGACCTAGACAGCAGGGTACCAAAGAACCATAAACTAGAAAATAACCAGAGCCCGTACAATCAGGAAGTAGAAAGCCAGGGACCAAGCAGTCAGATGACAAGCATGGGTAAAACAGGCTTCGGCGAACTAGATGTATGGGAATAAGCCAGTTAGAAGCATGTGAAAATGGGATACTACTGAAGTGTGTGGTTTTGGTGTGATTTGTCTCATGATTTTGTAGATTACGTGTACAGTTTAGTGTATGGTGTGAATAATAGCTGTATAATAGGTTCATCACATGTGATTTAATCAAACTGATCATTTTCGTTGGAGTGATATTTA

Function

NR:

description
PREDICTED: zonadhesin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587319.2 True 9189 mRNA 0.56 58 4573030 4626743

Neighbor

gene id symbol gene type direction distance location
scn3b LOC106612464 coding downstream 659 4550225 ~ 4572371 (-)
drd2a d2r2 coding downstream 67078 4472051 ~ 4505952 (-)
zgc:162608 LOC106612462 coding downstream 274350 4291400 ~ 4298680 (-)
laynb layn coding downstream 296598 4270462 ~ 4276432 (-)
sik2b sik2 coding downstream 304051 4200942 ~ 4268979 (-)
ccdc153 ccdc153 coding upstream 719585 5346328 ~ 5350245 (-)
LOC110507384 mcam coding upstream 816272 5443015 ~ 5490555 (-)
c1qtnf5 c1qtnf5 coding upstream 896137 5522880 ~ 5526800 (-)
kmt2a kmt2a coding upstream 905134 5531877 ~ 5586139 (-)
LOC110507388 ube4a coding upstream 964753 5591496 ~ 5613273 (-)
G2043524 NA non-coding downstream 149474 4423202 ~ 4423556 (-)
G2043521 NA non-coding downstream 151662 4420694 ~ 4421368 (-)
G2043520 NA non-coding downstream 154486 4418285 ~ 4418544 (-)
G2043519 NA non-coding downstream 158249 4414504 ~ 4414781 (-)
G2043515 NA non-coding downstream 161434 4411211 ~ 4411596 (-)
G2044174 LOC106612424 non-coding upstream 41110 4667853 ~ 4670268 (-)
G2044185 NA non-coding upstream 59108 4685851 ~ 4691129 (-)
G2044198 LOC106612468 non-coding upstream 84815 4711558 ~ 4773052 (-)
G2044228 NA non-coding upstream 126370 4753113 ~ 4754540 (-)
G2044237 NA non-coding upstream 152376 4779119 ~ 4781134 (-)
G2043518 NA other downstream 158607 4414065 ~ 4414423 (-)
G2043483 NA other downstream 193601 4378934 ~ 4379429 (-)
G2043460 NA other downstream 224621 4343599 ~ 4348409 (-)
LOC110507356 LOC106580682 other downstream 1031277 3539029 ~ 3718487 (-)
G2042608 NA other downstream 1170033 3400579 ~ 3402997 (-)
G2045223 LOC106612485 other upstream 1241832 5868575 ~ 5870139 (-)
LOC110507410 LOC106612495 other upstream 1605872 6228113 ~ 6235871 (-)
LOC110507421 gemin7 other upstream 1862979 6489704 ~ 6491119 (-)
LOC110507418 NA other upstream 1875672 6501784 ~ 6512110 (-)

Expression


Co-expression Network